Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03249 and RBAM_019940

See Amino acid alignment / Visit BSNT_03249 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:22
# Commandline: needle
#    -asequence dna-align/BSNT_03249___yplQ.1.9828.seq
#    -bsequence dna-align/RBAM_019940___yplQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03249___yplQ-RBAM_019940___yplQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03249___yplQ-RBAM_019940___yplQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03249___yplQ
# 2: RBAM_019940___yplQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 649
# Identity:     482/649 (74.3%)
# Similarity:   482/649 (74.3%)
# Gaps:          17/649 ( 2.6%)
# Score: 1707.0
# 
#
#=======================================

BSNT_03249___      1 TTGTTTACAATCAAAGAAGAGATCGCCAATGCGATTACACACGGCATCGG     50
                     |||||.|||||.||||||||.|||||.|||||..|.||||||||.|||||
RBAM_019940__      1 TTGTTCACAATAAAAGAAGAAATCGCAAATGCCGTCACACACGGAATCGG     50

BSNT_03249___     51 TGTCCTCTTATCCATCCCAGC-ATTAGTGTTTCTAATCATATTTGCGGCT     99
                     |||..|..|.||.||.||.|| .||| |.|||||.||.||.||.||||..
RBAM_019940__     51 TGTATTGCTGTCGATTCCGGCGCTTA-TTTTTCTCATTATCTTCGCGGTG     99

BSNT_03249___    100 AATTACGGGTCTG----CATGGGACATTATCAGCTTTACAATATTCGGTG    145
                     ||.|||||.|| |    ||   |||||..||||||||.||||.|||||.|
RBAM_019940__    100 AAATACGGCTC-GCCGACA---GACATCGTCAGCTTTTCAATCTTCGGCG    145

BSNT_03249___    146 TCTCTATGCTGCTGTTATATTTGAGCTCCACCCTGCTTCACAGCA-TCAC    194
                     ..||.|||||||||.|.|||.|.|||||.||.||..|.||||||| ||| 
RBAM_019940__    146 CTTCAATGCTGCTGCTGTATCTCAGCTCGACTCTTTTGCACAGCATTCA-    194

BSNT_03249___    195 ACATAAAAAAACGAAGGACATTTTGGAGATTATTGATCATAGCGCGATTT    244
                     .||||||||||||||.||||||.|.||||||.|.||||||..||||||.|
RBAM_019940__    195 GCATAAAAAAACGAAAGACATTCTTGAGATTGTGGATCATTCCGCGATAT    244

BSNT_03249___    245 ACGTACTCATCGCCGGAACCTACACGCCTTTTTTGCTTGGGCCGCTGAAA    294
                     |||||.|.||.||||||||.||.|||||.|||||..|.||.||.||.|||
RBAM_019940__    245 ACGTATTAATAGCCGGAACATATACGCCATTTTTATTAGGACCCCTTAAA    294

BSNT_03249___    295 GGCACACTCGGCTTTACCCTGTTGGTTATCGTATGGTCACTTGCCCTAGG    344
                     ||..|.|||||..|.|||||.||..||||.||.|||||.||||||.|.||
RBAM_019940__    295 GGGGCGCTCGGTCTGACCCTTTTAATTATTGTTTGGTCGCTTGCCATCGG    344

BSNT_03249___    345 CGGAATCGTTTTTAAAATTTTCTTTGTGAAACGGTTTATCCTATTGTCAA    394
                     .||.|||||.||||||||.||.||.|||||.|||||||||.|.||.||||
RBAM_019940__    345 AGGCATCGTGTTTAAAATCTTTTTCGTGAAGCGGTTTATCATTTTTTCAA    394

BSNT_03249___    395 C-CTTCGTGTATTTAGTCATGGGGTGGCTGATGATTATTGCAGTTAAACC    443
                     | ||| ||.||||||.|.|||||.||||||||.||..|.||..|||||||
RBAM_019940__    395 CGCTT-GTCTATTTAATGATGGGCTGGCTGATCATCGTCGCCATTAAACC    443

BSNT_03249___    444 TTTATATGTTTCACTGAGCGGAGCGGGATTCAGCCTCCTTTTTCTCGGCG    493
                     ..|.||.|.|||.|||...||..|.||.|||.||||.|||.||.||||||
RBAM_019940__    444 GCTGTACGCTTCGCTGTCAGGCCCCGGTTTCGGCCTTCTTCTTTTCGGCG    493

BSNT_03249___    494 GCATTTTATACTCTGTCGGGACCATCTTTTACATTTGGAAAAAGATCCCC    543
                     ||.|.||.||.||.|.|||.||.||.|||||.|||||||.||||.|.||.
RBAM_019940__    494 GCTTATTGTATTCCGCCGGCACAATATTTTATATTTGGAGAAAGGTTCCG    543

BSNT_03249___    544 TTCCATCACGCCATTTGGCACAGCTTTGTATTGGGCGGGAGCGCCGCCAT    593
                     |..||||||||||||||||||||.|||||.||.|||||.||||||.|.||
RBAM_019940__    544 TATCATCACGCCATTTGGCACAGTTTTGTTTTAGGCGGCAGCGCCTCGAT    593

BSNT_03249___    594 GTTTTTCTGCGTGCTCTTCTATTGTGTAAAAGTGCCGTTCCTTTCGTAA    642
                     |||||||||..|..|.||.|||||.||.|||||.||.||  |.||..| 
RBAM_019940__    594 GTTTTTCTGTATTTTATTTTATTGCGTCAAAGTCCCCTT--TATCTGA-    639


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