Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03248 and RBAM_019930
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:21
# Commandline: needle
# -asequence dna-align/BSNT_03248___yplP.1.9828.seq
# -bsequence dna-align/RBAM_019930___yplP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03248___yplP-RBAM_019930___yplP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03248___yplP-RBAM_019930___yplP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03248___yplP
# 2: RBAM_019930___yplP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1057
# Identity: 686/1057 (64.9%)
# Similarity: 686/1057 (64.9%)
# Gaps: 125/1057 (11.8%)
# Score: 2032.0
#
#
#=======================================
BSNT_03248___ 1 ATGAAT---AGTGCACCAAAACTCAATACATTTCAACATCTAATCGGAGA 47
||||.| |.||.|| ||||| .||.|.|||.|.||.||...|||.||
RBAM_019930__ 1 ATGAGTGTAATTGAAC--AAACT-GATCCTTTTTATCAGCTGGCCGGCGA 47
BSNT_03248___ 48 ACATCA-AACTTTTCTGGAAGCGAAGCGAATCGCCAAGCAGTTCTCGTTA 96
|||.|| |.|||||| .||||||||.|||.|.|||..|||.||..|.|||
RBAM_019930__ 48 ACACCACACCTTTTC-AGAAGCGAAACGATTGGCCTCGCAATTTGCCTTA 96
BSNT_03248___ 97 TCGGAGCTTCCTGTCTTAATAACAGGAAAAATCGGAACAGGCAAAAATCA 146
||.||..|.||.|||||.|||||.||..||.|||||||.||.|||||.||
RBAM_019930__ 97 TCTGATTTGCCGGTCTTCATAACGGGTGAAGTCGGAACCGGAAAAAAACA 146
BSNT_03248___ 147 CTTCGCACATGCCATACACTTGGAATCTTCG-AGAAGCAATGAACCGTTT 195
..|.||..|.||.||.|||....|||| .|| ||||.||..||||..|||
RBAM_019930__ 147 AATGGCCAAAGCGATTCACCATAAATC-CCGCAGAAACAGCGAACTATTT 195
BSNT_03248___ 196 ATGAGCGTCAATTGCAGCACCCATTCGGAAGA--------AACCCTTTTT 237
||.|.|||..|.||||| |||....||||| ||
RBAM_019930__ 196 ATTACCGTTCACTGCAG---CCAAAGCGAAGAGCGGCTCGAA-------- 234
BSNT_03248___ 238 CATGAGCTTTTTGGCCCTAACGGAAACACAGGTGTTTTTCAAAAAGCGGT 287
.||||.||.||.|||.||.|.|| |.|| |.|||.||.|..
RBAM_019930__ 235 TATGAACTGTTCGGCGCTGAAGG---CGCA--------TTAAACAGGGCC 273
BSNT_03248___ 288 A--CGAGGAACCCTTTTTCTTGATGATGTA--TGGCG-CATGCCTGCT-T 331
| ||.|||| |.||.||||| || |||.| .||.| |||||| ||| |
RBAM_019930__ 274 AGCCGCGGAA-CATTATTCTT-AT-ATGAAATCGGAGACATGCC-GCTCT 319
BSNT_03248___ 332 CTGTACAAGCTC------------AGCTG-----------TTAAAAGCGC 358
|.|||||.||.| ||||| ||.....|||
RBAM_019930__ 320 CGGTACAGGCCCGCCTTCTTTCCAAGCTGGATGCCGGGCTTTCCGCCCGC 369
BSNT_03248___ 359 TTGATT-----CAGACACGGAGAAACCGCGAATGATCTGTGCTTCTGC-A 402
.|.||| ||| |||||.| ||||| || || |
RBAM_019930__ 370 ATCATTGCAAGCAG-CACGGCG-----------GATCT-TG-----GCGA 401
BSNT_03248___ 403 GACCGATCCGTGGAACATACATTCAGGCAAGACTTATTCTACAGACTGAA 452
.|||| .||..|||.||||.|||||.|||||.|||||.|||||.||..|
RBAM_019930__ 402 TACCG--GCGCAGAAAATACGTTCAGCCAAGATTTATTTTACAGGCTTCA 449
BSNT_03248___ 453 CATTTTAACGCTCACACTGCCCGAATTATCGGAACGAAAAAGCGATATTC 502
|.|.|||...||..|.||.||.|..|||||.|||||||||||||||||.|
RBAM_019930__ 450 CGTGTTATGCCTTCCGCTCCCTGCTTTATCTGAACGAAAAAGCGATATAC 499
BSNT_03248___ 503 CGCTTTTGACACAGCATTTTCTCTCAAATTCCGGTCAGCA-ATTCTTAAT 551
|||||.|....||||||.|.||..||...||.||.||||| ||||.| ||
RBAM_019930__ 500 CGCTTCTTCTGCAGCATATGCTGACAGCCTCGGGGCAGCATATTCAT-AT 548
BSNT_03248___ 552 CGATCCCTCCGTTTTTCCCGTGCTTGAGAAGCATGCATTTGAAGGCAATG 601
||||||.|||||||.|||..||.|||||..|||..|.|||.|.|||||..
RBAM_019930__ 549 CGATCCGTCCGTTTATCCGCTGTTTGAGCGGCACACCTTTAACGGCAACA 598
BSNT_03248___ 602 TCAGGGAATTAAAAAACGCTGCAGATTATATG---GCGGCAGTATCAAGC 648
||||.|||.|..||||.||.||..|.|||||| |||||||.||| |
RBAM_019930__ 599 TCAGAGAACTTCAAAATGCGGCGTACTATATGGCCGCGGCAGCATC---C 645
BSNT_03248___ 649 GGGGGAACGATTCAGCCATATGACCTGCCGCCGTATATTAGAGGCGCGAT 698
||..|.||||||.|.||..||||..|.||||.||||||.|.| .|.
RBAM_019930__ 646 GGCAGCACGATTTATCCCGATGATGTCCCGCTGTATATCAAA-----AAC 690
BSNT_03248___ 699 AGACAGA-----AAAACGTCGAAGAAAAAAGCGAAGCTGCTGACTTTAAT 743
||.|||| |||||..|.||||||||||..||.|.||||||.||.||
RBAM_019930__ 691 AGCCAGAAAGCGAAAACAGCTAAGAAAAAAGAAAAACGGCTGACATTGAT 740
BSNT_03248___ 744 GGAAAAAGCTGAGTTTTTGTTTATTTTGGAAACAATAAAAGTATTGAACG 793
|||.||||..|||||||||||||||||||||.||||.||||..||.||..
RBAM_019930__ 741 GGAGAAAGAAGAGTTTTTGTTTATTTTGGAATCAATTAAAGACTTAAATA 790
BSNT_03248___ 794 AAAAAGGAGAACCTGCCAGCAGACGGATCATTTCTGAACACAGCAAAAAT 843
.||||||.|||||.|||||||||||||.|||.||.|||...|||.||||.
RBAM_019930__ 791 CAAAAGGCGAACCCGCCAGCAGACGGAGCATATCCGAATTAAGCGAAAAC 840
BSNT_03248___ 844 ACCCAAACCTCGTTAACTCCTCAGCAGGTCAGAAGCCGTCTCGACTATTT 893
|.|..||...|.|||.|.||.|||||||||||||.|.|.||.||.||.||
RBAM_019930__ 841 AGCACAATGACATTATCGCCCCAGCAGGTCAGAAACAGGCTTGATTACTT 890
BSNT_03248___ 894 GGAGAAAAAAGAT----TATGTCACCAAAAGCCGCGGACGCGCAGGCACA 939
|.||||||| |||||.||.|||.||||.||||||||.||.|||
RBAM_019930__ 891 ----AGAAAAGATGAACTATGTGACAAAAGGCCGAGGACGCGCTGGAACA 936
BSNT_03248___ 940 AAAATTACCTTTGAGGGCTTGAGCTTTATAGAGACGTTAAAAAATCAAAT 989
||||||||.||.||.||.|||||||||.|..||.|..|..||||.|||||
RBAM_019930__ 937 AAAATTACATTAGAAGGGTTGAGCTTTTTGCAGTCACTGCAAAAACAAAT 986
BSNT_03248___ 990 GATCTAG 996
..|.||.
RBAM_019930__ 987 CCTTTAA 993
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