Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03245 and RBAM_019910

See Amino acid alignment / Visit BSNT_03245 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:21
# Commandline: needle
#    -asequence dna-align/BSNT_03245___ypmP.1.9828.seq
#    -bsequence dna-align/RBAM_019910___ypmP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03245___ypmP-RBAM_019910___ypmP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03245___ypmP-RBAM_019910___ypmP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03245___ypmP
# 2: RBAM_019910___ypmP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 255
# Identity:     198/255 (77.6%)
# Similarity:   198/255 (77.6%)
# Gaps:           6/255 ( 2.4%)
# Score: 726.0
# 
#
#=======================================

BSNT_03245___      1 TTGTTACTCAAAAGCCTAGAGTTCAAACGCGATGACGGGATTCAGGTGAA     50
                     |||||||||||||||||||||||||||||..|.||||||||||||||.||
RBAM_019910__      1 TTGTTACTCAAAAGCCTAGAGTTCAAACGACAGGACGGGATTCAGGTAAA     50

BSNT_03245___     51 AGTGACAGAAATACCTGTATTAAAGGAAGATGAGCACTATTTCTTT-ATG     99
                     |||||||||||||||.||..|.|.|||||.|||.||.|||||.||| |..
RBAM_019910__     51 AGTGACAGAAATACCGGTTGTCACGGAAGGTGAACATTATTTTTTTCAAA    100

BSNT_03245___    100 TTACATCACCA-TTTGCAATTCTACTTAAAAGAAGTGTTTTCATCAAACA    148
                     || |||||.|| .||| |..|.||.||.|.|||.||.|||.|.|||.|.|
RBAM_019910__    101 TT-CATCAGCACCTTG-AGCTTTATTTGAGAGAGGTTTTTGCTTCACAAA    148

BSNT_03245___    149 GCAGGGCAAAAGTGTATTCTTTCCGACATTATATGAAGCGCCGGATGAAG    198
                     |...|..||.|||||||||.||||||||.|||.|.||||||||.||||||
RBAM_019910__    149 GTGTGAGAACAGTGTATTCATTCCGACAATATGTCAAGCGCCGTATGAAG    198

BSNT_03245___    199 TGGGCAGATTATCAGGCTGTATTTC-ATCAAGAGGTGTTAAAGCACAACG    247
                     |||..||||||..||||.|| |||| |.||||||.|.|||||.||.||||
RBAM_019910__    199 TGGAAAGATTACGAGGCCGT-TTTCAACCAAGAGATTTTAAAACATAACG    247

BSNT_03245___    248 CGTAA    252
                     |.|||
RBAM_019910__    248 CATAA    252


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.