Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03241 and RBAM_019880
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:21
# Commandline: needle
# -asequence dna-align/BSNT_03241___ypmS.1.9828.seq
# -bsequence dna-align/RBAM_019880___ypmS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03241___ypmS-RBAM_019880___ypmS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03241___ypmS-RBAM_019880___ypmS.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03241___ypmS
# 2: RBAM_019880___ypmS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 581
# Identity: 426/581 (73.3%)
# Similarity: 426/581 (73.3%)
# Gaps: 34/581 ( 5.9%)
# Score: 1477.0
#
#
#=======================================
BSNT_03241___ 1 ATGAATAAGTGG-AAGCGACTGTTTTTTATATTGCTTGCAATCAATTTTA 49
|||||.|||||| ||.|| |||||||||.|..|.||.|||.|||||.|.|
RBAM_019880__ 1 ATGAAAAAGTGGAAATCG-CTGTTTTTTGTTCTTCTCGCACTCAATGTGA 49
BSNT_03241___ 50 TCCTCGCCGCCG-GGT--TTGTGGCACTT----GTTTTGCTCCCGGGGGA 92
|.||||||| ||| |||||.|| || |||.|| |||||.||
RBAM_019880__ 50 ---TTGCCGCCGCGGTAATTGTGACA-TTATTGGTTATG---CCGGGAGA 92
BSNT_03241___ 93 ACAGGCTCAGGTGAAGGATTC---ATCTG----AGAGCGAGTATGGATTT 135
.||||| ||| .||.| |||.| |.||.|||||.||.|||
RBAM_019880__ 93 GCAGGC------GAA-AATACAAGATCAGACAAAAAGTGAGTACGGCTTT 135
BSNT_03241___ 136 CAAGTGACAAGCACAAAAGAATCATTAGCTGCGTTTGTTAACTCATATTT 185
||..|.||.|||.|.||||||||..|.||...||||||.||..|.||.||
RBAM_019880__ 136 CATATCACGAGCTCGAAAGAATCTCTTGCCAGGTTTGTGAATGCGTACTT 185
BSNT_03241___ 186 AAACGACAAAGCATCAAACAAGCTTGATTATAAAGTAGAGATTGATGATG 235
|||.||.||.|||||.||..|||||||.||.|||||.||.||..||.|.|
RBAM_019880__ 186 AAAAGAGAAGGCATCGAATCAGCTTGACTACAAAGTGGACATCAATAACG 235
BSNT_03241___ 236 ATGTTCATGTCGCAGGGAAAATCAAGGCATTTTCCACGTCTATTGATGCG 285
||||.||.||.|||||.||||||||.|||||.||.||.||.|||.|.|||
RBAM_019880__ 236 ATGTGCACGTGGCAGGTAAAATCAAAGCATTCTCAACCTCCATTAACGCG 285
BSNT_03241___ 286 TTTATCGCTTTTGAGCCGACTGTGAAAAAAAACGGTGATGTAGA-GCTGA 334
.|..||.|.|||||.|||.|.||..|..|.|||||.||||| || |.|||
RBAM_019880__ 286 GTCGTCACATTTGAACCGTCCGTACAGGAGAACGGAGATGT-GATGTTGA 334
BSNT_03241___ 335 ATGTCACGAAATTTTCGTTAGGGAAATTGAGTATACCAATTAGCTTTGTG 384
|.||.|||||.|||||.|||||..||||.||..|.||.||.|||||||||
RBAM_019880__ 335 AAGTGACGAAGTTTTCATTAGGCGAATTAAGCCTGCCGATCAGCTTTGTG 384
BSNT_03241___ 385 TTAAATTATATGGACAGCTTTTATGAATTGCCGTCATTTGTCCATGTTCA 434
.|.||||||||||||||||||||||||.|.|||||||||||.||.|||||
RBAM_019880__ 385 CTGAATTATATGGACAGCTTTTATGAACTCCCGTCATTTGTGCACGTTCA 434
BSNT_03241___ 435 CCCCGGAGAAAAAAGCATTGAAGTGCGTTTGTCAGAAATGCCTTTA-ACG 483
..||||.||.||||||||.||..|.|||.||||.|||||||||||| ||
RBAM_019880__ 435 TTCCGGGGATAAAAGCATCGAGATCCGTCTGTCGGAAATGCCTTTAGAC- 483
BSNT_03241___ 484 AATGGAATGTATGTCAAAGCGGATAAGATAAATTTAGAAAAAGATGAAAT 533
||.||.||||||||.|||||||||||.||.|||.|.||.|..||||||||
RBAM_019880__ 484 AACGGCATGTATGTAAAAGCGGATAAAATCAATCTCGACACGGATGAAAT 533
BSNT_03241___ 534 TGAGTTTTCCTATTACCATCCTAAACAATAG 564
|||.|||||||||||.|||||.||||||||.
RBAM_019880__ 534 TGAATTTTCCTATTATCATCCGAAACAATAA 564
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