Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03237 and RBAM_019870

See Amino acid alignment / Visit BSNT_03237 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:21
# Commandline: needle
#    -asequence dna-align/BSNT_03237___ypoP.1.9828.seq
#    -bsequence dna-align/RBAM_019870___ypoP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03237___ypoP-RBAM_019870___ypoP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03237___ypoP-RBAM_019870___ypoP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03237___ypoP
# 2: RBAM_019870___ypoP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 430
# Identity:     347/430 (80.7%)
# Similarity:   347/430 (80.7%)
# Gaps:           8/430 ( 1.9%)
# Score: 1402.5
# 
#
#=======================================

BSNT_03237___      1 TTGAAAGTAAGAACACAGATGATGTACGATATGGAAACTTTACTCCGTAA     50
                     |||||||||||.|||||.||||||||.|||||||||.||||.||.||.||
RBAM_019870__      1 TTGAAAGTAAGGACACAAATGATGTATGATATGGAAGCTTTGCTTCGAAA     50

BSNT_03237___     51 AGTCTTTAAACAAATACGCAATGAAATCAATGAAATTTTAGATAAAGAGC    100
                     |||.|||||||||||..|.||||||.|.|||||||||.||||||||||||
RBAM_019870__     51 AGTGTTTAAACAAATCAGAAATGAAGTTAATGAAATTCTAGATAAAGAGC    100

BSNT_03237___    101 TGTCGCGGAATGAATTCACCATTCTTCGGATCCTCAGTGAACAAGGGCCT    150
                     ||||..||||||||||.|.||||.|.|||||.||||||||||||||.|||
RBAM_019870__    101 TGTCCAGGAATGAATTTATCATTTTGCGGATTCTCAGTGAACAAGGACCT    150

BSNT_03237___    151 AAAAAAGTCACTGAATTTGCGCCTATTTTAGAGGTATCGGCAAGCCACAT    200
                     ||||||||.||.|||||.||.||.|||.|.|||||.||.|||||||||||
RBAM_019870__    151 AAAAAAGTAACGGAATTCGCCCCCATTCTTGAGGTCTCCGCAAGCCACAT    200

BSNT_03237___    201 TACGGCTGTGACCGATGCGCTGGTAGAAAAGGAATGGATTACGAGAATCA    250
                     |||.||.||||||||.||..|.|||||||||||||||||.||..|.|||.
RBAM_019870__    201 TACCGCAGTGACCGACGCTTTAGTAGAAAAGGAATGGATCACCCGCATCC    250

BSNT_03237___    251 GATCGAAGGAAGACAGACGCATCATCCGCATTCATATCACTGAAGCGGGC    300
                     |.||.||.||.||||||||.||.|||.|.||.|||||.||.|||||.||.
RBAM_019870__    251 GTTCCAAAGAGGACAGACGAATTATCAGAATCCATATTACGGAAGCCGGG    300

BSNT_03237___    301 GAAAAA---GTCCTTCAGCACTTT-AACGAGAAAAAAACGGAATATTTCT    346
                     ||.|||   |||..|||    ||| |||.||||||||||.|||||.||.|
RBAM_019870__    301 GAGAAAATTGTCGATCA----TTTCAACCAGAAAAAAACAGAATACTTTT    346

BSNT_03237___    347 TTAAACGCTTTGACTGCTACACTGATGCTGAACTTGCCACGTTAATCGAG    396
                     |||||||.||||||||||||.||||||..||.||.||.|||||||||.|.
RBAM_019870__    347 TTAAACGGTTTGACTGCTACTCTGATGAAGAGCTCGCAACGTTAATCAAA    396

BSNT_03237___    397 CTCTTCAGCAAACTTGATAAAAAACGGTGA    426
                     ||.||||||||.||.|||||||||||.|||
RBAM_019870__    397 CTGTTCAGCAAGCTGGATAAAAAACGCTGA    426


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