Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03232 and RBAM_019840
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:21
# Commandline: needle
# -asequence dna-align/BSNT_03232.1.9828.seq
# -bsequence dna-align/RBAM_019840___ypqP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03232-RBAM_019840___ypqP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03232-RBAM_019840___ypqP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03232
# 2: RBAM_019840___ypqP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1026
# Identity: 456/1026 (44.4%)
# Similarity: 456/1026 (44.4%)
# Gaps: 435/1026 (42.4%)
# Score: 1740.0
#
#
#=======================================
BSNT_03232 1 ATGCCTAAACAGCAAACAGCAGAGCTAAAACCATTTTTCCATAACAAAAC 50
RBAM_019840__ 0 -------------------------------------------------- 0
BSNT_03232 51 AGTTTTAGTCACTGGCGGAACGGGTTCAATCGGGAGTCAAATTGTCAAAC 100
RBAM_019840__ 0 -------------------------------------------------- 0
BSNT_03232 101 GCCTTTTGATGCTTACACCTAAACAGGTGATTGTATTCAGCAAAGACGAC 150
RBAM_019840__ 0 -------------------------------------------------- 0
BSNT_03232 151 AGTAAACAGTATGTCATGAGCCAAAAGTATGCGGAGGATAAGCGGCTATT 200
RBAM_019840__ 0 -------------------------------------------------- 0
BSNT_03232 201 ATTTGTACTCGGAGATGTACGCGATCACAGAAGGGTGAATCAGGTGATGA 250
RBAM_019840__ 0 -------------------------------------------------- 0
BSNT_03232 251 AAGGCGTCGATATCGTCTTTCACGCGGCTGCGCTGAAACAGGTTCCGACA 300
RBAM_019840__ 0 -------------------------------------------------- 0
BSNT_03232 301 TGTGAGGACCATCCATTTGAAGCGATCCAGACCAATCTCATCGGCGGACA 350
RBAM_019840__ 0 -------------------------------------------------- 0
BSNT_03232 351 AAATGTGGTGGAAGCTGCCCTTTCACACCGAGTGCAGCATGTCATTAATA 400
RBAM_019840__ 0 -------------------------------------------------- 0
BSNT_03232 401 TCAGTACAGATAAAGCTGTATCTCCTGTGAACACAATGGGTGCCACCAAG 450
|||||.||.||.|||
RBAM_019840__ 1 -----------------------------------ATGGGAGCTACGAAG 15
BSNT_03232 451 CTGTTATCTGAAAAGCTGTTTCATCAAGCAAACCGCCACGTCCAAAACAA 500
|||||.||.|||||||||||||||||.||.||.|..||.||.||||||..
RBAM_019840__ 16 CTGTTGTCCGAAAAGCTGTTTCATCAGGCGAATCATCATGTTCAAAACCG 65
BSNT_03232 501 AGGAACCTTGTTTTGTTCGGTCCGCTTTGGAAATGTTCTCGGTTCCAGAG 550
.||.||..|.|||||||||||||||||.||.||||||||.|||||..|.|
RBAM_019840__ 66 CGGTACGGTATTTTGTTCGGTCCGCTTCGGCAATGTTCTAGGTTCACGCG 115
BSNT_03232 551 GTTCGGTCATCCCCATATTATTTGAACAGATGATGGAGGGTGAACCTCTG 600
||||.||.||.||.||.||||||||.|||.|.||||..||.|..||.||.
RBAM_019840__ 116 GTTCCGTTATTCCTATTTTATTTGAGCAGTTAATGGCTGGCGGCCCGCTC 165
BSNT_03232 601 ACCATCACAGACAAAAACATGACCAGATTTTTCATGTCAATAGACGATGC 650
|||||.||.||.|||||||||||.||.|||||.|||||.||.||.|||||
RBAM_019840__ 166 ACCATTACGGATAAAAACATGACGAGGTTTTTTATGTCGATTGATGATGC 215
BSNT_03232 651 AGCTACATTGACATTACAATCGGCTGCTATTACAAAAGGTGGAGAAACTT 700
.||.||..|.||..|.|||||.||.||.||||||||.||.||||||||.|
RBAM_019840__ 216 CGCAACGCTCACCCTGCAATCTGCGGCGATTACAAAGGGCGGAGAAACGT 265
BSNT_03232 701 TTATTTTCAAAATGGAATCACTGAAACTTGAAGAACTGATTCATGGGTTT 750
|||||||.||||||||.||.||||..||||||||||||.||||.||.|||
RBAM_019840__ 266 TTATTTTTAAAATGGAGTCCCTGAGGCTTGAAGAACTGCTTCACGGATTT 315
BSNT_03232 751 GAAGAATATGCATCGCAGCACGGGCTCCCGCGGCCGGCTGCAGTAGAAGT 800
|||||||||||.|..|.||||||.||.||||||||.||.||.||.|||||
RBAM_019840__ 316 GAAGAATATGCGTTCCGGCACGGACTGCCGCGGCCAGCCGCTGTTGAAGT 365
BSNT_03232 801 GGGCAAGCGTCCAGGTGAAAAGCTTCACGAAGAATTAACATCTCCACATG 850
|||.||.||.||.|||||.||||||||.||||||.|.||.|||||.||||
RBAM_019840__ 366 GGGAAAACGCCCCGGTGAGAAGCTTCATGAAGAACTGACCTCTCCTCATG 415
BSNT_03232 851 AAATTGAATCACTGTATGAATGGGGCAACCTTTATGCGATCCTTCCAGAG 900
|.|..|||||..|.||||||||||||||.|||||.||.||..|.||.||.
RBAM_019840__ 416 AGACGGAATCTTTATATGAATGGGGCAATCTTTACGCAATATTGCCGGAA 465
BSNT_03232 901 CCGGAAAAACATCCTGACTTTCGCAAAGTCAATCTGCCTGGGTATCAATC 950
||.|..||||||||.||.|||||.||.||||||||.||..|.||||||||
RBAM_019840__ 466 CCCGCCAAACATCCGGAATTTCGGAAGGTCAATCTCCCCAGATATCAATC 515
BSNT_03232 951 AGATCAAGCCCCGCTCATTACGAAAGAAAGAATTGCTCAGATTATTGAAG 1000
.|||||.||.||||||||.||.|||||.|.|||.|...|||||||||||.
RBAM_019840__ 516 CGATCAGGCGCCGCTCATCACAAAAGACACAATCGTAAAGATTATTGAAC 565
BSNT_03232 1001 AATTGCATCAAGAGAAAAAGGCATAA 1026
.|||.|||.||||.|||||..||||.
RBAM_019840__ 566 GATTACATGAAGAAAAAAAAACATAG 591
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