Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03094 and RBAM_019810
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:57
# Commandline: needle
# -asequence dna-align/BSNT_03094___yokK.1.9828.seq
# -bsequence dna-align/RBAM_019810___yokK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03094___yokK-RBAM_019810___yokK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03094___yokK-RBAM_019810___yokK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03094___yokK
# 2: RBAM_019810___yokK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 685
# Identity: 333/685 (48.6%)
# Similarity: 333/685 (48.6%)
# Gaps: 254/685 (37.1%)
# Score: 709.0
#
#
#=======================================
BSNT_03094___ 1 ATGAGCTTCAA--TAATGTCAAACAAAAGTTGAAAGAGT--TTTTAATTG 46
|||.||||..| ||| ||||..|||| ||.|||| .|||||||
RBAM_019810__ 1 ATGGGCTTACAGGTAA--TCAAGAAAAA----AATGAGTGAATTTAATT- 43
BSNT_03094___ 47 ATGCAAAAACAGATCCCAGAATCAATAAAAATGAACA-----ACTCA--A 89
.||||...|||.|..|||| ||||| .|||| |
RBAM_019810__ 44 ---------TAGATATAAGACTTGATAA----GAACATAAATTCTCATCA 80
BSNT_03094___ 90 AGAAATTGAAA----TGAACATAGGAAAACAATTACCTTC---------- 125
||...||.||| || ||||..|.|||| |.|||
RBAM_019810__ 81 AGTTCTTAAAAAGTTTG-----AGGACGAAAATT-CTTTCGACATATCAG 124
BSNT_03094___ 126 -TGATTATAAGGACTTTTTGAAGGAATATGGCG---GCTGTTATTTAGAA 171
|||||||||.||.|||.|.||...|||.||.| |||| ||.
RBAM_019810__ 125 ATGATTATAAAGAGTTTCTCAATTTATACGGGGAATGCTG-------GAT 167
BSNT_03094___ 172 AGTAAAAAAACATCA-GATGAGATTGAGTATGACGTTTGCTATAAACCTA 220
|| | ||.||.|.||.||.| |||.||.| |.
RBAM_019810__ 168 AG------------AGGAAGATAATGTGTTT----TTTCCTGT-----TT 196
BSNT_03094___ 221 TAGAGAAAGATCCTTGGATGGGCAAGGGCGATGATACAC---AAT----T 263
|||||.|..|||| |...||| |||| || ||| .
RBAM_019810__ 197 TAGAGGACAATCC----ACTAGCA--------GATA-ACGGTAATCTCCG 233
BSNT_03094___ 264 GTTAGAAGGTTTTTATGGTTTAGCGAACGATCATGACAGTCTTCAGAAAG 313
|||.|.|..|||.| ||.|||||.|.||
RBAM_019810__ 234 GTTGGGATATTTCT---------------------ACGGTCTTAATAA-- 260
BSNT_03094___ 314 CAATCGATAC--ATATTCT-------------GATCGCTTTCCTAG---A 345
|||| |||.| |||||.| ||| ||||| || |
RBAM_019810__ 261 CAAT-GATGCTAATATTATCAAATTAAAAGAGGAT--CTTTC--AGAACA 305
BSNT_03094___ 346 AAT----------ATTATTCCTATCGCAAGCTCTGCAGGTG-----GGA- 379
||| |||||.||.||.| |||..|||| |||
RBAM_019810__ 306 AATGCCGGACTGGATTATACCGATTG------CTGATGGTGACGGAGGAG 349
BSNT_03094___ 380 ATGAAATATGTATGGATATCGATA-----------ATGGAAAG-ATATTG 417
||.||||.|||.|.|.|.| ||.| |.|||||| .|||
RBAM_019810__ 350 ATCAAATTTGTCTTGGTGT-GAAAGGGGAGGCAGCAGGGAAAGTTTAT-- 396
BSNT_03094___ 418 TTTTGGGATCATGAATTAAGTCATCCCGAC----------AAAGACTTTT 457
||||||||||||||||| ||| ||||||...|
RBAM_019810__ 397 TTTTGGGATCATGAATT----------GACAAATGGAGTAAAAGACACGT 436
BSNT_03094___ 458 TCTTAATTGCCAATTCGTTTGAGGAGTTTGTCTTCA----------GTTT 497
|.||..|.||.|||||.|| .|.||.||||| ||||
RBAM_019810__ 437 TTTTGGTGGCAAATTCTTT------CTCTGACTTCATTCAAAGTCTGTTT 480
BSNT_03094___ 498 AGTTGATGA---ACCAATTGAAGCTGATAAAGAAGATGATGGAATTCTGT 544
| |.||.|| |.||..|||.|..||| |||||.|||||.|||.|.|
RBAM_019810__ 481 A-TAGAAGAGACAGCAGATGAGGACGAT---GAAGACGATGGTATTTTAT 526
BSNT_03094___ 545 ATATTGA-----ATAA------------------- 555
.|||||| ||.|
RBAM_019810__ 527 CTATTGAGCTAGATGATGATTTATTAAACAGTTAA 561
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