Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03229 and RBAM_019620
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:20
# Commandline: needle
# -asequence dna-align/BSNT_03229___cgeA.1.9828.seq
# -bsequence dna-align/RBAM_019620___cgeA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03229___cgeA-RBAM_019620___cgeA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03229___cgeA-RBAM_019620___cgeA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03229___cgeA
# 2: RBAM_019620___cgeA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 434
# Identity: 240/434 (55.3%)
# Similarity: 240/434 (55.3%)
# Gaps: 124/434 (28.6%)
# Score: 789.5
#
#
#=======================================
BSNT_03229___ 0 -------------------------------------------------- 0
RBAM_019620__ 1 ATGAGCGAAGATCGTTTGGAGCTTAAAAAGAACTTATTGAAAACTCTTTT 50
BSNT_03229___ 1 -----------------------------------------ATG-----G 4
||| |
RBAM_019620__ 51 AGCCCCTGTATTTGACAACAGCGCTTTATCTGGCGGTACAGATGGAGGAG 100
BSNT_03229___ 5 ATA--GT-------AACCTTAAAGACTTGCTTGAAGCTGCCATCGAT-CA 44
||| || |.|.|.|||||.||..|.|||||.||.||.||| ||
RBAM_019620__ 101 ATAACGTGAAAAACAGCGTAAAAGAATTATTGGAAGCGGCAATTGATGCA 150
BSNT_03229___ 45 AAGAGTAGATGAA-----AGTG--AGATGG--TTACGGCAGAATCTCTTT 85
|| |||||||||| .||| |||..| |.|..|||.|||||.|.|
RBAM_019620__ 151 AA-AGTAGATGAAGCAGCGGTGAAAGACAGTCTCAGCGCACAATCTGTAT 199
BSNT_03229___ 86 TAG--ACC----CTTCCCTTCCGGCAAGATGGATTTTTGCCAGAGTTACG 129
|.| |.| .|||..|..||||.||||||||||||||.|||.||..|
RBAM_019620__ 200 TGGGAAGCGGTATTTCATTAGCGGCGAGATGGATTTTTGCAAGAATTCAG 249
BSNT_03229___ 130 CCAGGCAC-GACAATCAGCATTGTAACCGATTCGGGAGACATGATCGGGC 178
||.||||| |.| |||||||||||.|..|||||.||||||||||||||.|
RBAM_019620__ 250 CCCGGCACTGTC-ATCAGCATTGTGATGGATTCAGGAGACATGATCGGCC 298
BSNT_03229___ 179 CGGTTGTCTTCGTTGCTTTCGATCAGGTTCACGGGATCGTATTTGTAACA 228
|||||...||.|||||.||.||..|..|||||||.|||||.|||||.||.
RBAM_019620__ 299 CGGTTCAATTTGTTGCCTTTGACGAAATTCACGGAATCGTTTTTGTTACG 348
BSNT_03229___ 229 CAGGAAAGCTCCGTCACTCCAGCAGGCCAAGCTACAACATTAATTGATGT 278
|||||||..|||||.||.||.||||||...|||||||||||..||||.||
RBAM_019620__ 349 CAGGAAAATTCCGTTACACCGGCAGGCTCTGCTACAACATTGCTTGACGT 398
BSNT_03229___ 279 AGACAAAGTAGAAAGCGTTACGTTCTTTTCATAA 312
.||||||||.|||||.||.||||||..|||.|||
RBAM_019620__ 399 CGACAAAGTTGAAAGTGTCACGTTCACTTCGTAA 432
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