Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03228 and RBAM_019610
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:20
# Commandline: needle
# -asequence dna-align/BSNT_03228___cgeC.1.9828.seq
# -bsequence dna-align/RBAM_019610___cgeC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03228___cgeC-RBAM_019610___cgeC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03228___cgeC-RBAM_019610___cgeC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03228___cgeC
# 2: RBAM_019610___cgeC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 326
# Identity: 215/326 (66.0%)
# Similarity: 215/326 (66.0%)
# Gaps: 46/326 (14.1%)
# Score: 678.0
#
#
#=======================================
BSNT_03228___ 1 TTGGATTTAGA---------GAAACAAGTGG--ATCGAGAAGAAAATCAA 39
|||||||.||| .|||||.|.|| .|.|||.||.||.|..|
RBAM_019610__ 1 TTGGATTCAGAAGAAACTGTAAAACACGGGGGTTTTGAGGAGGAATTTCA 50
BSNT_03228___ 40 GAT-GAACTGCATTTTATTTTGCTTTTGCTGATTCTGCTGATACGTCAAT 88
|.| |.||||| ||.||.|.|||||| ||.|.| |||||..
RBAM_019610__ 51 GCTCGTACTGC---TTCTTCTTCTTTTG----TTATCC-----CGTCAGC 88
BSNT_03228___ 89 CGTCTTCTGAAGGAAATCCATCTGACCTCAGA-------CGCCAGCTTGT 131
|||| .|||.|| ||| ||||| ||.||||||||
RBAM_019610__ 89 CGTC------CGGAGAT-CAT------TCAGATTTGCGGCGTCAGCTTGT 125
BSNT_03228___ 132 TTTTGCAAAAGAGCTGGGCGTACCGGTTTCAAAAGTCAATTTGATTAACG 181
..|.|||||||||||.||.||.||.||.|||...||||||.|||||||||
RBAM_019610__ 126 AATGGCAAAAGAGCTTGGGGTTCCTGTATCACGCGTCAATCTGATTAACG 175
BSNT_03228___ 182 G-AGATACACTTCAAAATGTCATCGTAAAAGAAGTTCTGACTGATTTGGT 230
| || .|||||.|||||.||.||.||.||||||||.|||.|.|||||||.
RBAM_019610__ 176 GCAG-CACACTGCAAAACGTAATTGTCAAAGAAGTGCTGTCAGATTTGGC 224
BSNT_03228___ 231 TATTTTCCAAAACCCGTTAAATAACACGAGATCTCATGTTTCACTCTCAA 280
..||||.|||||.|||.|.|||.|.||||||||..|.||..|..|.||||
RBAM_019610__ 225 CGTTTTTCAAAATCCGCTCAATCATACGAGATCAAACGTCGCGATTTCAA 274
BSNT_03228___ 281 GTGTTGTAAGCTGGGGTGCTTTTTAA 306
|..|.||.||||||||||||||||||
RBAM_019610__ 275 GCATCGTCAGCTGGGGTGCTTTTTAA 300
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