Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03226 and RBAM_019600
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:20
# Commandline: needle
# -asequence dna-align/BSNT_03226___cgeD.1.9828.seq
# -bsequence dna-align/RBAM_019600___cgeD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03226___cgeD-RBAM_019600___cgeD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03226___cgeD-RBAM_019600___cgeD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03226___cgeD
# 2: RBAM_019600___cgeD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1370
# Identity: 876/1370 (63.9%)
# Similarity: 876/1370 (63.9%)
# Gaps: 187/1370 (13.6%)
# Score: 2536.0
#
#
#=======================================
BSNT_03226___ 1 ATGGGAGAGAAAGTGTCTATTATTTTAACAAGTTACAACAAACCCGATTA 50
||||.|.||||..|.||.|||||.|||||.||||||||||||||.|||..
RBAM_019600__ 1 ATGGAAAAGAAGATCTCAATTATCTTAACGAGTTACAACAAACCGGATCT 50
BSNT_03226___ 51 TTTGCAAAAAGCGATCGAAAGCGT---------GA--TACAGCAAACGCA 89
|.||.||.|.|||||.|||||.|| || |||||.||
RBAM_019600__ 51 TGTGAAACAGGCGATTGAAAGTGTTTTGCATCAGACCTACAGAAA----- 95
BSNT_03226___ 90 TGATCTTTGGGAGCTTTTTATCATGGATGATCATTCGAATGCAGAAACAA 139
|||||||||.|||.|.||||||||||||||.||||.||||||..
RBAM_019600__ 96 ------TTGGGAGCTGTTTGTAATGGATGATCATTCAAATGAAGAAACCT 139
BSNT_03226___ 140 CTGCGGTGATTCA-CAAGTATCTCCACGACCGGCGCATTCAATATCATAA 188
|.||.|..| ||| .|.||||.|..|.||.|..|||||..|.|||.|.||
RBAM_019600__ 140 CGGCTGCCA-TCAGTACGTATATAAAAGATCCTCGCATATATTATGACAA 188
BSNT_03226___ 189 CAGTTTCGTGCATCCTGCAGATCGATTAAAAACAGCTCGTTATGCCACAT 238
||||||..|..|||||||.||.||..|.||..|..|.||.||||||...|
RBAM_019600__ 189 CAGTTTTATCAATCCTGCCGAACGGCTGAAGTCGACCCGGTATGCCGTTT 238
BSNT_03226___ 239 TAATTAACAGTGCGCTCCCATTTGCAGACGGCGATTACATTTCCTATCTT 288
|.|||||...||||||..||...||..|.|||||.|||||..|.|||.|.
RBAM_019600__ 239 TGATTAATGATGCGCTTTCACGGGCTAAAGGCGAATACATCACTTATTTG 288
BSNT_03226___ 289 ACTGACGACACTGTTTATCATCCTGAGCGGCTGAGCCGTATGATGCAAGA 338
||.||||||||.||.|.||||||.||..||||.|||||.|||..|.|||.
RBAM_019600__ 289 ACAGACGACACCGTATTTCATCCGGATAGGCTCAGCCGCATGGCGGAAGC 338
BSNT_03226___ 339 GTTT--TCACATAAGCCTGAAGCGCAG------GCGGTCTATTCAAAACA 380
|.|| ||| ||| .|||| || ||.||||||||.|..||
RBAM_019600__ 339 GCTTAATCA-ATA------CAGCG-AGTTTGATGCCGTCTATTCCAGCCA 380
BSNT_03226___ 381 AAAAGTTGTACATGTAAACGAAAGGGGAGAGGA-------AATCTCACAT 423
.||.||..||||||||||| |||.|.||| |||..|||
RBAM_019600__ 381 GAAGGTGATACATGTAAAC-----GGGCGCGGAACAGAACAATTCCAC-- 423
BSNT_03226___ 424 TTCTACAGAAATGCCAATGCAGTGCTTGATCAGGCCGCTTTTCAAGTTGA 473
|||||..|...|||..|.|..|||||.||||||||||||||||..|||||
RBAM_019600__ 424 TTCTATCGTTTTGCTGAAGAGGTGCTAGATCAGGCCGCTTTTCTCGTTGA 473
BSNT_03226___ 474 TCATTGCTCCGTTATGCATCGCCGTTCGTTACTTAATCTCATCCACCATA 523
|||.||.||.||.|||||.||..|.||.||.|||.|.|...|..|..|.|
RBAM_019600__ 474 TCACTGTTCAGTGATGCACCGGAGATCATTGCTTGAGCGTGTGAAAGAGA 523
BSNT_03226___ 524 AATTTGGAGGCTACTGGGATGATGATATGAAGCATTGGAATCATGGCGAC 573
|.||.||..|||..|||||.||.|||.|.|.||||||||||||.||.|||
RBAM_019600__ 524 AGTTCGGCAGCTTTTGGGACGAAGATGTTATGCATTGGAATCACGGAGAC 573
BSNT_03226___ 574 GCAATTTTTTGG-GCGAGACTCAACAACTTTACCCCATTTCTGCCGATAA 622
.|..|||||||| || ||..||||||..|||||..|||||||||||||||
RBAM_019600__ 574 TCTGTTTTTTGGAGC-AGGATCAACACATTTACATCATTTCTGCCGATAA 622
BSNT_03226___ 623 ATGAAGTATTAGACACAACCTATAAAACCCCAGATTCATTTCAAAATGCA 672
|.|||||.||.||.||.|||||||||||.||..|.||||||||.||..|.
RBAM_019600__ 623 AAGAAGTGTTGGATACGACCTATAAAACACCCCACTCATTTCAGAACACG 672
BSNT_03226___ 673 T----ATCGGTT---TCTGCCCGCCGATTTGATTGACGGCTCTTTTGTAA 715
| ||||.|| ||||.|| ||||.|||||.||.|||||||
RBAM_019600__ 673 TATCAATCGCTTCCGTCTGTCC-------TGATCGACGGATCCTTTGTAA 715
BSNT_03226___ 716 AAGGTTCAGATCA-AAATGTGTATTTTTTTGATCAGGGTG---------T 755
|.||..|.||||| ||| |||| |||||..|| .
RBAM_019600__ 716 AGGGGACGGATCAGAAA---GTAT-------ATCAGCTTGACCGAAATAA 755
BSNT_03226___ 756 AAGGCATCCTGTTGGAGAAAAG-----TGGGGTTTTTTGTATCTAAATCG 800
||||.|.||||| |||.| |||..|...||.|||..|...||
RBAM_019600__ 756 AAGGAAGCCTGT-----AAACGAGCGCTGGCATACGTTATATGAAGGGCG 800
BSNT_03226___ 801 GACTGTCGCTGTTCCAGACCCATATTTATTCCAATAT-AGGATTGGCAAA 849
.||.||||...||||.||.||.|.||||||.|||||| ||||...|
RBAM_019600__ 801 AACCGTCGTCATTCCGGATCCGTTTTTATTTCAATATGAGGAAGAG---- 846
BSNT_03226___ 850 ATTTTAAAC---------ATTCCGAATTATATTT----TAGTAAAGGA-- 884
||| ||||||||| ||| |.||.|.|||
RBAM_019600__ 847 ------AACTCCGTCAGTATTCCGAAT----TTTCAGCTCGTCAGGGATC 886
BSNT_03226___ 885 AGCTGACCATCCTGCAATATTTTATATCGAAGCTGGAAAAAAAAGGCGAA 934
||.| ||.|| ..||||||||| ||||..||..|.|||||||
RBAM_019600__ 887 AGTT-----TCATG-TTTATTTTATA--GAAGACGGGGAGAAAAGGC--- 925
BSNT_03226___ 935 TTGTGGACCAGTATGCG--TTTCAATTTTATCAATTTCAAAGAAAAGACA 982
|.||.||.|| || ||| ||||..|||||.|.|||| |||.|.||
RBAM_019600__ 926 TGGTTGATCA-TA-GCGCATTTCGCTTTTACCGATTT-----AAACGGCA 968
BSNT_03226___ 983 TAGTGACA-------ATTGGAA-AAGAAGAGATGGAGACGCTTCCGGAAG 1024
||||| |||.||| ..||.||.||..|..||||||||||.|
RBAM_019600__ 969 ---TGACATCCCGGCATTAGAACGGGACGAAATACAAGCGCTTCCGGACG 1015
BSNT_03226___ 1025 GGCCGCCGATTA-CGTGGAAACGATC----TGAATTGATCAAAAATCCGC 1069
|.||||||||.| |..||..|| ||| ||.||| .||.|||.||
RBAM_019600__ 1016 GTCCGCCGATCAGCAGGGGGAC-ATCGGGGTGTATT----CAACATCTGC 1060
BSNT_03226___ 1070 CTGGCCGACGTCTGTTTTTCATCGAACGCGAGCCGTTTT-TGTTTCT--- 1115
|.||..||...||||||..|||.|||| ||...|||| |||||.|
RBAM_019600__ 1061 CCGGGAGAATGCTGTTTCGCATTGAAC---AGGAATTTTATGTTTATTTG 1107
BSNT_03226___ 1116 AAACGGCGTCTTTCACCCGATTAGTGAACAAGTAACAAGGAAGTTTTTTT 1165
|.| ||.||..|.||.|||||.|||.|..|.|||.| |.||...|||||
RBAM_019600__ 1108 AGA-GGGGTTCTCCATCCGATCAGTCATGACGTAGC--GAAACGCTTTTT 1154
BSNT_03226___ 1166 TAC--ATCAAAAGCCAATCTCCGCTT-CTTTCCGAAATATTCAGCAATTT 1212
|.| ||||.|||.|.||..||..|| |||||.|.|| |||.|.|||||.
RBAM_019600__ 1155 TGCGAATCAGAAGGCGATACCCATTTCCTTTCAGCAA-ATTAAACAATTA 1203
BSNT_03226___ 1213 CCAATTGGAAAGCCGTTTTATCCGGTGTACGATGAGATTATAAAGAAAT- 1261
||||||||||.||||||.|||||||||||||||||.||||| .||||||
RBAM_019600__ 1204 CCAATTGGAATGCCGTTCTATCCGGTGTACGATGAAATTAT-GAGAAATC 1252
BSNT_03226___ 1262 TGAATATTGCAACAGAGTAA 1281
|.|||||..|||.||..|.|
RBAM_019600__ 1253 TCAATATAACAAAAGGTTGA 1272
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