Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03220 and RBAM_019550
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:19
# Commandline: needle
# -asequence dna-align/BSNT_03220___yodR.1.9828.seq
# -bsequence dna-align/RBAM_019550___yodR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03220___yodR-RBAM_019550___yodR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03220___yodR-RBAM_019550___yodR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03220___yodR
# 2: RBAM_019550___yodR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 716
# Identity: 486/716 (67.9%)
# Similarity: 486/716 (67.9%)
# Gaps: 82/716 (11.5%)
# Score: 1666.5
#
#
#=======================================
BSNT_03220___ 1 ATGGGCTTGGGAGTAGCAGAAAGAGAACAG-ATTGCAAAACGCGCTGCTA 49
||||||||||||.||||.||||||| |.|| ||.||.|..||.||.||.|
RBAM_019550__ 1 ATGGGCTTGGGAATAGCGGAAAGAG-AGAGTATCGCGAGGCGGGCCGCCA 49
BSNT_03220___ 50 CTGAAATTA-AGCAGGGCATGATTGTGAATCTCGGTATCGGTATCCCATC 98
.||||.||| ..|| ||.||||||||.||.||.||.|||||.||.||.||
RBAM_019550__ 50 GTGAAGTTACCTCA-GGTATGATTGTCAACCTGGGGATCGGCATTCCTTC 98
BSNT_03220___ 99 CTTGGTACCGAACTTTTTGAAGCCT---GACATGCAGGTCATGTTTCAAG 145
.||.||.|||||||||.| |||| |.||||.||||||||.|.||.|
RBAM_019550__ 99 TTTAGTGCCGAACTTTCT---GCCTGCCGGCATGGAGGTCATGCTGCAGG 145
BSNT_03220___ 146 CGGAAAACGGTGTCCTTGGCATTGGAGAAAGTCCCGAAAAGGGAGAAGAG 195
||||||||||.|||||.||.||.||.|..|||||.||....|||||.|||
RBAM_019550__ 146 CGGAAAACGGCGTCCTCGGGATCGGCGGCAGTCCGGAGCGCGGAGAGGAG 195
BSNT_03220___ 196 GATGCGCATTTATGCAACGCCGCGGGATATCCTGTCCGCGCTGTAAAAGG 245
||||.||.|||||||||.||.||.||.|.|||||||.|..|.||.||.||
RBAM_019550__ 196 GATGAGCTTTTATGCAATGCGGCCGGGTTTCCTGTCAGTACAGTTAAGGG 245
BSNT_03220___ 246 GGCGTCTTATTTTGATACAACCATGTCTTTTGCAATGATCAGAAAAGGCA 295
.||.||.|||||||||.||.|..||||||||||.||||||||||||||..
RBAM_019550__ 246 TGCTTCCTATTTTGATTCAGCTCTGTCTTTTGCCATGATCAGAAAAGGGC 295
BSNT_03220___ 296 AAATTGACATTACGATTTTAGGCGCCCTGCAGGTGAGCCAATCAGGAGAT 345
..||.||.|||||.|||||||||||.||.||.||.|||....||||.|||
RBAM_019550__ 296 TGATAGATATTACCATTTTAGGCGCGCTCCAAGTCAGCAGGACAGGTGAT 345
BSNT_03220___ 346 TTGGCAAATTGGCTTGTTCCGGGAAAAAAGGTGCCTGGTATGGGCGGGGC 395
.|.||.||||||||.||.|||||||||||.|||||.||.|||||||||||
RBAM_019550__ 346 CTCGCCAATTGGCTCGTGCCGGGAAAAAAAGTGCCCGGAATGGGCGGGGC 395
BSNT_03220___ 396 GATGGAGCTTGCCCAAAAAGCGAAAAAAGTGGTTGTCGTCATGAGTCATA 445
||||||||||||||||...|||||||||||.||||||||||||||.||.|
RBAM_019550__ 396 GATGGAGCTTGCCCAAGGCGCGAAAAAAGTAGTTGTCGTCATGAGCCACA 445
BSNT_03220___ 446 CAGATCAAAAGGGAAGGCCTAAATTAACAGAAAGATGTACGCTGCCATTA 495
|.|||||.||.||..||||.||..|....|||||.|||.|..||||..|.
RBAM_019550__ 446 CCGATCAGAAAGGCCGGCCGAAGCTGGTCGAAAGCTGTTCATTGCCGCTT 495
BSNT_03220___ 496 ACTGCTGCAGGCTGTGTAGATTTGATTATTACCGAAAAAGCGGTTCTTGA 545
||.||.||.|||||||.||||.|.||.|||||.||.|||||.| ||.|.|
RBAM_019550__ 496 ACAGCAGCGGGCTGTGCAGATCTCATCATTACAGAGAAAGCCG-TCATCA 544
BSNT_03220___ 546 GGTCGATAGCCATCA------CTTCATTTTAAAAGAGCTGATGAATGGCT 589
| .|||| ||.| .||..||.|..|.||.|||.||||||||.
RBAM_019550__ 545 G---CATAG--ATGATGGGGCTTTTGTTCTTGAGGAACTGCTGAATGGCA 589
BSNT_03220___ 590 CGACAATCGATGAGGTGA--CGAGGCTGACA---GAAGCTGAAATCAAAA 634
||||.||.||.||.||.| |.| ||| ||.||.|||||||.|.
RBAM_019550__ 590 CGACCATAGACGATGTCATTCAA-----ACAACGGATGCCGAAATCAGAT 634
BSNT_03220___ 635 T---AGATATGCCTTTTTCTTAA--------------------------- 654
| ||| ||| |||||||||
RBAM_019550__ 635 TGGGAGA-ATG---TTTTCTTAAAAGGGGGTCTGTCCATGGATCAATTAG 680
BSNT_03220___ 654 ---------------- 654
RBAM_019550__ 681 AAGAGAAAGTCACTGA 696
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