Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03215 and RBAM_019520
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:17
# Commandline: needle
# -asequence dna-align/BSNT_03215___kamA.1.9828.seq
# -bsequence dna-align/RBAM_019520___kamA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03215___kamA-RBAM_019520___kamA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03215___kamA-RBAM_019520___kamA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03215___kamA
# 2: RBAM_019520___kamA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1428
# Identity: 1146/1428 (80.3%)
# Similarity: 1146/1428 (80.3%)
# Gaps: 18/1428 ( 1.3%)
# Score: 4589.0
#
#
#=======================================
BSNT_03215___ 1 TTGAAAAACAAATGGTATAAACCGAAACGGCATTGGAAGGAGATCGAGTT 50
||||.|||||||||||.|.|.|||||.||.||||||||||||||.||.||
RBAM_019520__ 1 TTGACAAACAAATGGTTTCAGCCGAAGCGTCATTGGAAGGAGATTGAATT 50
BSNT_03215___ 51 ATGGAAGGACGTTCCGGAAGAGAAATGGAACGATTGGCTTTGGCAGCTGA 100
.|||||.||.||.||||||||.||.|||||.||||||||.||||||||.|
RBAM_019520__ 51 GTGGAAAGATGTGCCGGAAGACAAGTGGAATGATTGGCTGTGGCAGCTCA 100
BSNT_03215___ 101 CACATACTGTAAGAACGTTAGATGATTTAAAGAAAGTCATCAATCTGACT 150
|.||||||||||||||..|.|||||..|.||.||||||||..||.||||.
RBAM_019520__ 101 CCCATACTGTAAGAACCGTCGATGACCTGAAAAAAGTCATTCATTTGACC 150
BSNT_03215___ 151 GAGGATGAAGAGGAAGGCGTCAGAATTTCTACTAAAACGATCCCCTTAAA 200
||.||.|||||.|||||||||||.||.|||...|||||.||.|||.|.||
RBAM_019520__ 151 GAAGAGGAAGAAGAAGGCGTCAGGATGTCTGTAAAAACCATTCCCCTGAA 200
BSNT_03215___ 201 TATTACACCTTACTATGCTTCTTTAATGGACCCCGACAATCCGAGATGCC 250
.|||||.|||||.|||||||||||||||||.|||||.||.||||||||.|
RBAM_019520__ 201 CATTACGCCTTATTATGCTTCTTTAATGGATCCCGATAACCCGAGATGTC 250
BSNT_03215___ 251 CGGTACGCATGCAGTCTGTGCCGCTTTCTGAAGAAATGCACAAAACAAAA 300
||.|.|||||||||||.||||||||.||.|||||||||||||||||.|||
RBAM_019520__ 251 CGATCCGCATGCAGTCCGTGCCGCTGTCAGAAGAAATGCACAAAACGAAA 300
BSNT_03215___ 301 TACGATCTGGAAGACCCGCTTCATGAGGATGAAGATTCACCGGTACCCGG 350
||.||.||.|||||.|||||...|||.|||||||||||||||||.|||||
RBAM_019520__ 301 TATGACCTTGAAGATCCGCTGTTTGAAGATGAAGATTCACCGGTTCCCGG 350
BSNT_03215___ 351 TCTGACACACCGCTATCCCGACCGTGTGCTGTTTCTTGTCACGAATCAAT 400
|||.||.|||||.|||||||||||.||.||.|||||.||.||.|||||||
RBAM_019520__ 351 TCTTACGCACCGATATCCCGACCGCGTTCTTTTTCTGGTGACAAATCAAT 400
BSNT_03215___ 401 GTTCTATGTACTGCCGCTACTGCACAAGAAGGCGCTTTTCCGGACAAATC 450
|.||.|||||.|||||.||.|||||.||||||||.|||||||||||.|||
RBAM_019520__ 401 GCTCGATGTATTGCCGATATTGCACCAGAAGGCGTTTTTCCGGACAGATC 450
BSNT_03215___ 451 GGAATGGGCGTCCCAAAAAAACAGCTTGATGCTGCAATTGCTTATATCCG 500
||||||||.||.||.|||||||||||.|||||.|||||.|||||.|||||
RBAM_019520__ 451 GGAATGGGGGTGCCGAAAAAACAGCTCGATGCGGCAATCGCTTACATCCG 500
BSNT_03215___ 501 GGAAACACCCGAAATCCGCGATTGTTTAATTTCAGGCGGTGATGGGCTGC 550
||||||.||.||||||||.||.||..|.|||||.|||||.||.|||||..
RBAM_019520__ 501 GGAAACGCCGGAAATCCGTGACTGCCTGATTTCCGGCGGAGACGGGCTTT 550
BSNT_03215___ 551 TCATCAACGACCAAATTTTAGAATATATTTTAAAAGAGCTGCGCAGCATT 600
|.||||||||.||.|||.|.|||||||||||.|||.|.|||||...||||
RBAM_019520__ 551 TAATCAACGATCAGATTCTGGAATATATTTTGAAAAACCTGCGTGACATT 600
BSNT_03215___ 601 CCGCATCTGGAAGTCATCAGAATCGGAACAAGAGCGCCCGTTGTCTTTCC 650
||.|||||.|||.|.|||.|.||||||||.||||||||||||||.|||||
RBAM_019520__ 601 CCCCATCTTGAAATTATCCGGATCGGAACGAGAGCGCCCGTTGTATTTCC 650
BSNT_03215___ 651 GCAGCGCATTACCGATCATCTGTGCGAGATATTGAAAAAATATCATCCGG 700
||||||.||.||.|||.|.||.||.|||||.|||||||||||||||||||
RBAM_019520__ 651 GCAGCGGATAACGGATAACCTTTGTGAGATTTTGAAAAAATATCATCCGG 700
BSNT_03215___ 701 TCTGGCTGAATACCCATTTTAACACAAGCATCGAAATGACAGAAGAATCC 750
||||||||||.||.||||||||.||.|||||||||.||||.||||||||.
RBAM_019520__ 701 TCTGGCTGAACACTCATTTTAATACGAGCATCGAACTGACGGAAGAATCG 750
BSNT_03215___ 751 GTTGAGGCATGTGAAAAGCTGGTGAACGCGGGAGTGCCGGTCGGAAATCA 800
||||.|||.|||||||||||.||.|||||.||.||.||||||||.||.||
RBAM_019520__ 751 GTTGCGGCGTGTGAAAAGCTCGTTAACGCAGGTGTTCCGGTCGGTAACCA 800
BSNT_03215___ 801 GGCTGTCGTATTAGCAGGTATTAATGATTCGGTTCCAATTATGAAAAAGC 850
|||.||..|.||||||||.|||||.||||||||.||.|||||||||||.|
RBAM_019520__ 801 GGCCGTTATTTTAGCAGGCATTAACGATTCGGTGCCGATTATGAAAAAAC 850
BSNT_03215___ 851 TCATGCATGACTTGGTAAAAATCAGAGTCCGTCCTTATTATATTTACCAA 900
||||||||||.||.||.||||||.|.||.|||||.|||||||||||.|||
RBAM_019520__ 851 TCATGCATGATTTAGTGAAAATCCGTGTGCGTCCGTATTATATTTATCAA 900
BSNT_03215___ 901 TGTGATCTGTCAGAGGGAATCGGGCATTTCAGAGCTCCTGTTTCCAAAGG 950
||||||.||||||||||||||||.|||||||||||.|||||.||.|||||
RBAM_019520__ 901 TGTGATTTGTCAGAGGGAATCGGCCATTTCAGAGCGCCTGTGTCAAAAGG 950
BSNT_03215___ 951 TTTGGAGATCATTGAAGGGCTGAGAGGCCATACCTCAGGCTATGCGGTTC 1000
..||||.|||||||||||.|||||.|||||.||..|.||||.|||.||.|
RBAM_019520__ 951 GCTGGAAATCATTGAAGGACTGAGGGGCCACACAACGGGCTTTGCCGTGC 1000
BSNT_03215___ 1001 CTACCTTTGTCGTTGACGCACCAGGCGGAGGAGGTAAAATCGCCCTGCAG 1050
|.|||||||||||.|||||.||.||||||||.||||||||||||||||||
RBAM_019520__ 1001 CGACCTTTGTCGTCGACGCCCCGGGCGGAGGCGGTAAAATCGCCCTGCAG 1050
BSNT_03215___ 1051 CCAAACTATGTCCTGTCACAAAGTCCTGACAAA---GTGACCTTAAGAAA 1097
||.|||||..|.||.||.||||||||.||.||| |||| |.|||||
RBAM_019520__ 1051 CCGAACTACTTGCTCTCCCAAAGTCCGGAGAAAGTTGTGA---TCAGAAA 1097
BSNT_03215___ 1098 TTTTGAAGGTGTGATTACGTCATATCCGGAACCAGAGAATTATATCCCCA 1147
.||.|||||.||||||||.||.|||||.||.||.||.||.||||||||.|
RBAM_019520__ 1098 CTTCGAAGGGGTGATTACATCTTATCCCGAGCCGGAAAACTATATCCCGA 1147
BSNT_03215___ 1148 ATCAGGCAGACGCCTATTTTGAGTCCGTTTTCCCTGAAACCGCTGACAAA 1197
||||.||.||||.|||||||||.||.|||||.||.|.|| ||.||.|.||
RBAM_019520__ 1148 ATCAAGCCGACGACTATTTTGAATCTGTTTTTCCGGGAA-CGATGGCCAA 1196
BSNT_03215___ 1198 AAG-GAGCCGATCGGGCTGAGTGCCATTTTTGCTGACAAAGAAGTTTCGT 1246
|.| ||||||.||||.|||||.||||||||.||.||||||||.|||||||
RBAM_019520__ 1197 ACGCGAGCCGGTCGGACTGAGCGCCATTTTCGCGGACAAAGAGGTTTCGT 1246
BSNT_03215___ 1247 TTACACCTGAAAATGTAGACAGAATCAAAAGGAG--AGAGGCATACATCG 1294
|.|||||.|||||||||...||.|||.|.||||| |.|.|..|||||
RBAM_019520__ 1247 TCACACCGGAAAATGTATCGAGGATCGACAGGAGGAAAACGTTTACAT-- 1294
BSNT_03215___ 1295 CAAATCCGGAGCATGAAACATTAAAAGATCGGCGTGAGAAAAGGGATCAG 1344
||||.||.||.||||||||..|.|||||.||..|.||.||.||.|||.|.
RBAM_019520__ 1295 CAAACCCTGATCATGAAACGCTGAAAGACCGCAGGGAAAAGAGAGATGAA 1344
BSNT_03215___ 1345 CTCAAAGAAAAGAAATTTTTGGCGCAGCAGAAAAAACAG-AAAGAG---- 1389
.|.|||||||||||||||.|.||.|||||.||.|||.|| |||.||
RBAM_019520__ 1345 TTGAAAGAAAAGAAATTTATTGCACAGCAAAAGAAAGAGCAAAAAGCAGG 1394
BSNT_03215___ 1390 -ACTGAATGCGGAGGGGATTCTTCATGA 1416
.|.|||..||||||.||.||..|.|||
RBAM_019520__ 1395 ATCGGAAGTCGGAGGTGAGTCGCCGTGA 1422
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