Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03208 and RBAM_019470

See Amino acid alignment / Visit BSNT_03208 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:15
# Commandline: needle
#    -asequence dna-align/BSNT_03208.1.9828.seq
#    -bsequence dna-align/RBAM_019470.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03208-RBAM_019470.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03208-RBAM_019470.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03208
# 2: RBAM_019470
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 145
# Identity:     107/145 (73.8%)
# Similarity:   107/145 (73.8%)
# Gaps:           2/145 ( 1.4%)
# Score: 371.0
# 
#
#=======================================

BSNT_03208         1 ATGATTGCTAAAATGATGGAAGCACTGGACGGAGAAAGATTTGATATCAT     50
                     |||||..|.||||||||||....|.||||||||||..|||||||||||.|
RBAM_019470        1 ATGATGACGAAAATGATGGCTTTATTGGACGGAGATGGATTTGATATCGT     50

BSNT_03208        51 AATGGAAAAAACGCTCAAAGGAATGACGCGTGTGATGATTTG-GGGCTGT     99
                     |.||||||||..|||.|||||||||.||..|||.|| .|||| .||||||
RBAM_019470       51 ATTGGAAAAAGTGCTGAAAGGAATGTCGTTTGTAAT-CTTTGCCGGCTGT     99

BSNT_03208       100 CTGCCATATTTTTTATATGTCTTGATCCGTATGTTCACAAACTAA    144
                     |||||.|..||||||||||||....|||||.|.||..|...|||.
RBAM_019470      100 CTGCCCTGGTTTTTATATGTCACCGTCCGTTTTTTTGCCGGCTAG    144


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