Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03205 and RBAM_019450
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:14
# Commandline: needle
# -asequence dna-align/BSNT_03205___yodM.1.9828.seq
# -bsequence dna-align/RBAM_019450___yodM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03205___yodM-RBAM_019450___yodM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03205___yodM-RBAM_019450___yodM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03205___yodM
# 2: RBAM_019450___yodM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 671
# Identity: 414/671 (61.7%)
# Similarity: 414/671 (61.7%)
# Gaps: 118/671 (17.6%)
# Score: 1141.5
#
#
#=======================================
BSNT_03205___ 1 TTGTACAAGCCCGTTAGTTTGTTTCTTTTC---TTTCTCATTCTAGCT-- 45
|||||||||||.|..|| ||||||| ||..|.||||| |||
RBAM_019450__ 1 TTGTACAAGCCAGCAAG------TCTTTTCGCATTGTTTATTCT-GCTCG 43
BSNT_03205___ 46 --GCGGCCATTC--ATACAAATGCTGTTCAATCTGCAGATGAAGC----A 87
||.||.||.| |||.|| ||.||.|....|...|||| ||| .
RBAM_019450__ 44 CAGCAGCGATCCGGATAGAA--GCCGTCCGGGTTTTTGATG-AGCGTGTC 90
BSNT_03205___ 88 ATAAGCAAGGCAGCTGTTTTGATC-CGTCAGCCATGGCTTAATGAAGTCA 136
||| .|.||.|||||...|||| .|.|.||| |||||.||||||.|.|
RBAM_019450__ 91 ATA---GAAGCGGCTGTCAGGATCAGGGCTGCC-TGGCTGAATGAATTGA 136
BSNT_03205___ 137 TG---------ACGGGGAT---CACGCATCTTGGTGCTTCTTCTTTTCTG 174
|| ||||.|.| |||| |.|..|||||| |||.|.|
RBAM_019450__ 137 TGTTATGGATAACGGAGCTCGGCACG-ACCGCGGTGCT-----TTTGCCG 180
BSNT_03205___ 175 CTCCCTCTAATTGTCATCATTGGAGCAGGC-ATGTTTTTCTACAGAAAAA 223
||.|.||| .|||.|| ||.|| ||| .|||.|.|.||||.|||||
RBAM_019450__ 181 CTTCTTCT-TTTGACA-----GGCGC-GGCTCTGTATATGTACAAAAAAA 223
BSNT_03205___ 224 CATGGGACGGCCTGTT--------GATGCTCTTAGT-ATTCGGCACAGAT 264
|...|||.| .|||| |.|.|||||..| ||| ||.
RBAM_019450__ 224 CGCCGGATG--TTGTTTTTTTGCCGCTTCTCTTTCTCATT-------GAA 264
BSNT_03205___ 265 CGGCTGTTAAAC----AAAGTCTTAAAAGAATGGATCGAAAGAGTGAGGC 310
|||.|..||||| ||| |||||||||.|||.|||||||..||.|
RBAM_019450__ 265 CGGATTGTAAACATAAAAA----TAAAAGAATTGATTGAAAGAGCCAGAC 310
BSNT_03205___ 311 CTGATTTTGCACCGCTGGTTCATGAATCATCCTTCAGTTTTCCGAGCGGC 360
|.|.|||||.||||||.||.||||||.|.||.|.||||||||||||||||
RBAM_019450__ 311 CCGCTTTTGAACCGCTCGTCCATGAAACCTCATACAGTTTTCCGAGCGGC 360
BSNT_03205___ 361 CATTCCATGAATGCTGCTTGTG-TCTATCCTGTTATTGCCTACTTTTTAG 409
||.|||||||||.|.|| .||| |.|||||.||.||.|..||||||||..
RBAM_019450__ 361 CACTCCATGAATTCGGC-AGTGATGTATCCCGTCATCGGTTACTTTTTGA 409
BSNT_03205___ 410 TGAAACACCTCCCGTTTTTGTCCAAGCATAAAAAAATG----------GT 449
|.||.||..|.||||||||..|.|| ||.||||.| ||
RBAM_019450__ 410 TCAAGCATGTTCCGTTTTTCACGAA----AAGAAAACGGGCCGTCACCGT 455
BSNT_03205___ 450 ATATATCATAGCCGGTGTAATTGCTGTTTTAGTCGGCATAAGCAGAGTGT 499
.|.|| ||||.||..|.|...||.|..||||..|.||||||.|.|
RBAM_019450__ 456 CTTTA------CCGGGGTTCTCGTCATTCTGATCGGATTCAGCAGAATTT 499
BSNT_03205___ 500 ATCTGGGGGTTCATTTTGTGACAGATGTGTTAGGCGGCTTTAGCCTCGG- 548
||.||||.|..||||||..|||.||||||.|.|.|||.||.||.|||||
RBAM_019450__ 500 ATTTGGGCGCGCATTTTCCGACGGATGTGCTTGCCGGATTCAGTCTCGGA 549
BSNT_03205___ 549 ------CTTGCTTCTGTTTTTCCTAGTAAAAGGT-TTTGACGAAAAGATT 591
||.|.|||..|||||.| |.| ||||||||||||..|
RBAM_019450__ 550 CTTTGCCTCGTTTCGCTTTTTGC--------GCTCTTTGACGAAAAGTAT 591
BSNT_03205___ 592 AAGCGGTTTCGACAAAAATAG 612
.|.|.||||||||||||||||
RBAM_019450__ 592 CATCCGTTTCGACAAAAATAG 612
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