Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03204 and RBAM_019440

See Amino acid alignment / Visit BSNT_03204 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:13
# Commandline: needle
#    -asequence dna-align/BSNT_03204___yodL.1.9828.seq
#    -bsequence dna-align/RBAM_019440___yodL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03204___yodL-RBAM_019440___yodL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03204___yodL-RBAM_019440___yodL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03204___yodL
# 2: RBAM_019440___yodL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 325
# Identity:     233/325 (71.7%)
# Similarity:   233/325 (71.7%)
# Gaps:          17/325 ( 5.2%)
# Score: 801.0
# 
#
#=======================================

BSNT_03204___      1 ---ATGTTAT------CCGTGTTTAAAAAGAAGTCTTGTTCCTATGACGT     41
                        .||||||      |||||||||||||.|||..|||..|||||||.||
RBAM_019440__      1 ATGCTGTTATCGCTGCCCGTGTTTAAAAAAAAGATTTGCGCCTATGATGT     50

BSNT_03204___     42 GACAATATTTCAGACACCCCGGTTTGGCGAAAAAAAGGGCTACAGAGCCG     91
                     |||.||.|||||.||||||||.|..|||||.||||||||.|||||.|.||
RBAM_019440__     51 GACGATTTTTCAAACACCCCGCTACGGCGAGAAAAAGGGATACAGGGTCG    100

BSNT_03204___     92 TCTATCGAACTGAACTGAACG-GGAGCGATCATCAAGACGTGCTGAAAAG    140
                     |||||||.||.||.|||..|| .|| |.||||||||||||..|||.||||
RBAM_019440__    101 TCTATCGGACAGAGCTGGCCGCTGA-CAATCATCAAGACGCACTGGAAAG    149

BSNT_03204___    141 AGCATTCTCTTTGTTTAATGTATTCGACACTGTTCCGAGTGATTATGATG    190
                     .|||||.|||.|.||||||||....||.||.||.||.|..||.|||.|.|
RBAM_019440__    150 GGCATTTTCTGTTTTTAATGTGCCTGATACGGTCCCAAACGACTATCAAG    199

BSNT_03204___    191 CAAGATTTATGGCCACAGGGGACGTGATCCTGATTGATGAAGGCAGAAAA    240
                     |.|||||.||.||.||.||.||.||.||.||.||.||.|||||.||||||
RBAM_019440__    200 CCAGATTCATAGCGACCGGAGATGTCATACTCATAGACGAAGGAAGAAAA    249

BSNT_03204___    241 GGGAAAACATATTATCAACTGCTT---CCCGCCGGCTGGAGGAAAATCAA    287
                     ||.||.||.||||| ||  .||||   ||.||.||.|||||.|||||.||
RBAM_019440__    250 GGAAAGACCTATTA-CA--GGCTTAACCCTGCGGGATGGAGCAAAATTAA    296

BSNT_03204___    288 TCGTCTGATTGTACAAACGACATAA    312
                     .||.|||.|.||.||..|||..|||
RBAM_019440__    297 CCGGCTGCTCGTCCAGCCGAGGTAA    321


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