Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03192 and RBAM_019340
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:05
# Commandline: needle
# -asequence dna-align/BSNT_03192___yodF.1.9828.seq
# -bsequence dna-align/RBAM_019340___yodF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03192___yodF-RBAM_019340___yodF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03192___yodF-RBAM_019340___yodF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03192___yodF
# 2: RBAM_019340___yodF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1509
# Identity: 1178/1509 (78.1%)
# Similarity: 1178/1509 (78.1%)
# Gaps: 36/1509 ( 2.4%)
# Score: 4578.0
#
#
#=======================================
BSNT_03192___ 1 ATGCAAGGGAATCTGACTGCACTTCTCATTACTGCTATTATTGTTTTAAC 50
||||..|..|||.|.||.|||.|..|||||||.||..|.||.||||||||
RBAM_019340__ 1 ATGCCCGCAAATATAACAGCATTGATCATTACAGCCGTCATCGTTTTAAC 50
BSNT_03192___ 51 CGTTGTCTGTATCGGCTTTCTCGCCGGAAGAGACAAATCCTCACGCACTT 100
|||||||||||||||||||.|.|||||.|||||||||||.||||||||||
RBAM_019340__ 51 CGTTGTCTGTATCGGCTTTATAGCCGGGAGAGACAAATCATCACGCACTT 100
BSNT_03192___ 101 CTGTGGAAGAATGGTCTGTCGGCGGCAGACGTTTCGGCGGTCTTCTCGTC 150
||||.||.|||||||||||||||||||||||.|||||.||.||.||||||
RBAM_019340__ 101 CTGTTGAGGAATGGTCTGTCGGCGGCAGACGGTTCGGGGGGCTCCTCGTC 150
BSNT_03192___ 151 TGGTTTTTAGTAGGCGCTGACCTTTATACGGCCTATACTTTCTTAGGGTT 200
|||||||||||.|||||.||.||.||||||||.|||||.||.|||||.||
RBAM_019340__ 151 TGGTTTTTAGTCGGCGCGGATCTCTATACGGCTTATACGTTTTTAGGCTT 200
BSNT_03192___ 201 GACCAGTACTGCTTTTACAGGCGGAAGTGTTGCATTTTTCGCCATTCCTT 250
.||.||.||.||.|..|||||.|||||.|||||.|||||.||.||.||.|
RBAM_019340__ 201 AACAAGCACAGCCTACACAGGGGGAAGCGTTGCTTTTTTTGCAATCCCGT 250
BSNT_03192___ 251 ATTCTGTGTTGGCCTACTTTATCGCCTACTTCTTCTTGCCAAAACTTTGG 300
|||||||.|||||.||.||||||||.||.|||||.|||||.||.||.|||
RBAM_019340__ 251 ATTCTGTTTTGGCGTATTTTATCGCTTATTTCTTTTTGCCGAAGCTGTGG 300
BSNT_03192___ 301 AATGTTGCGAAAATTCATAAACTAACAACACTCGCGGATTATGCCCGGGA 350
||.||.||.|||||.||.|||.||||.||.||.||.|||||||||||.||
RBAM_019340__ 301 AAAGTGGCAAAAATACACAAATTAACGACGCTTGCCGATTATGCCCGTGA 350
BSNT_03192___ 351 ACGTTTTAACAGTAAGCTTTTGGCAAGCCTCGTTGCCATCGTCGGGGTAC 400
.||||||.|||||||.||||||||.||.||.||.|||||.|||||.||.|
RBAM_019340__ 351 GCGTTTTGACAGTAAACTTTTGGCCAGTCTTGTCGCCATTGTCGGCGTTC 400
BSNT_03192___ 401 TCATGCTTATTCCGTACATATGCCTTCAGCTGAGCGGCATTCAAGACACG 450
|.|||||.|||||.||.||.||.||.|||||||||||.||||||||.|||
RBAM_019340__ 401 TTATGCTCATTCCTTATATTTGTCTCCAGCTGAGCGGAATTCAAGATACG 450
BSNT_03192___ 451 CTTCAGGTTGCCGGCACTGGCTAT-ATTAACGTAAAATTCGTTGTGATCA 499
||||||||.|||||.|| ||.|.| |||||.||.||..|.||.||.||||
RBAM_019340__ 451 CTTCAGGTGGCCGGAAC-GGGTGTCATTAATGTCAATATGGTCGTCATCA 499
BSNT_03192___ 500 TTTCATTTATTCTTGTTGCTCTTTACACATTCTTCAGCGGGATTAAAGGG 549
|.||.|||||||||||.||.||.||.||.||.||||||||.|||||||||
RBAM_019340__ 500 TCTCTTTTATTCTTGTAGCGCTGTATACTTTTTTCAGCGGAATTAAAGGG 549
BSNT_03192___ 550 CCCACATATACAGCCATCATTAAGGACATTTTAGTATGGGTCATTATGCT 599
||.||.|.|||.||.||.|||||.||||||.|.||.|||||.||||||||
RBAM_019340__ 550 CCGACGTTTACGGCGATTATTAAAGACATTCTCGTGTGGGTGATTATGCT 599
BSNT_03192___ 600 GTTTATGGTGGTGTCCCTCCCTCTCATTCATTTTAACGGCTGGACGCCAA 649
|||||||||.||.||.|||||.||.||.||||||.|||||||||||||.|
RBAM_019340__ 600 GTTTATGGTCGTATCACTCCCGCTGATCCATTTTCACGGCTGGACGCCGA 649
BSNT_03192___ 650 TGATTGACACGTTAG-TGAAGGAAGCACCGCAAATGCTGACGATACCGGC 698
|||||.||||.||.| |||| .||||.||||||||||||||||||||||
RBAM_019340__ 650 TGATTCACACTTTGGCTGAA-AAAGCGCCGCAAATGCTGACGATACCGG- 697
BSNT_03192___ 699 AGAA----GGGCCAAAAGGCATTCCTTGGTTTATCACAGCATCTATTGTT 744
| |||||.|||||.||||||||||||||||||||.||.||.||.
RBAM_019340__ 698 ---ACTCGGGGCCGAAAGGAATTCCTTGGTTTATCACAGCTTCCATCGTA 744
BSNT_03192___ 745 TCCGCTCTGGCACTTTTTATGTGGGCACACGCCGCTACAGGAGTTTTTAC 794
||.||.|||||.||.|||||||||||.||.||.||.||.||.||.|||||
RBAM_019340__ 745 TCTGCGCTGGCGCTCTTTATGTGGGCGCATGCGGCAACCGGCGTATTTAC 794
BSNT_03192___ 795 AGCGAAAAGCGCCGATGCAGTAAGAAAAAACAGCATGTTTTTACCCCTTT 844
.||.||||||||.|||||.||..|.|||||||||||||||.|.||.||||
RBAM_019340__ 795 GGCAAAAAGCGCAGATGCCGTCCGCAAAAACAGCATGTTTCTGCCGCTTT 844
BSNT_03192___ 845 ACAATATTGTGTTAATTTTGGTCATTTTTCTTGGCTTTATCGCCTTTCTT 894
|.||||||||.||.|||.|.||.||||||||.|||||||||||.||||||
RBAM_019340__ 845 ATAATATTGTTTTGATTCTTGTTATTTTTCTCGGCTTTATCGCGTTTCTT 894
BSNT_03192___ 895 ATCCTGCCGGAAGATACAAATCCAAGACTCGCGCTGCTGCATT-----TG 939
.||||||||||||||||.|||||..|.|| ||||..||| ||
RBAM_019340__ 895 GTCCTGCCGGAAGATACCAATCCGCGGCT-----TGCTTTATTGAAGCTG 939
BSNT_03192___ 940 ATTCAAACATCTTACGGCGGCGTGGCACAAGGTTTTGCATATGCCACTAT 989
||||||||.|||||||||||.||.||.||.||.|||||.||..||||.||
RBAM_019340__ 940 ATTCAAACGTCTTACGGCGGAGTCGCGCAGGGCTTTGCTTACTCCACGAT 989
BSNT_03192___ 990 CGCTCTTGCTTCATTAATACCTTGTTCCATTATGGCAATCGGCGCATCGA 1039
.||.|||||.|||||.||.||.||.||.||.|||||.|||||.|||||.|
RBAM_019340__ 990 TGCCCTTGCGTCATTGATTCCCTGCTCTATCATGGCCATCGGAGCATCAA 1039
BSNT_03192___ 1040 ATTTATTCGCCAACAACCTATACCGGGATTTGATTCATCCGAATGTGTCG 1089
|.|||||.||.||.|||.||||.||||||||||||||.|||||||||||.
RBAM_019340__ 1040 ACTTATTTGCGAATAACTTATATCGGGATTTGATTCACCCGAATGTGTCA 1089
BSNT_03192___ 1090 CAAAGCAAGCTTACTCTTGTCACACGTTCAATGGTCTTTGTTGTCATCGG 1139
|.|||||||||.||..|..||||.|||||||||||.|||||.||||||||
RBAM_019340__ 1090 CCAAGCAAGCTGACGATGATCACCCGTTCAATGGTATTTGTCGTCATCGG 1139
BSNT_03192___ 1140 TCTCGCGCTGCTGTTTGGAATGCTGTTCCCGACTGCCTTAGTGACACTCC 1189
.||||||||..|.||.||.|||||||||||||||||..|.||.||.||.|
RBAM_019340__ 1140 ACTCGCGCTTTTATTCGGCATGCTGTTCCCGACTGCGCTCGTTACCCTTC 1189
BSNT_03192___ 1190 AGCTATTAGGTGTATCCGGCATGGTGCAAATCTTCCCGGCGATTGCTGTC 1239
||||..|.|||||.|||||||||||.||.|||||.|||||.||.||.|||
RBAM_019340__ 1190 AGCTTCTCGGTGTTTCCGGCATGGTTCAGATCTTTCCGGCTATCGCCGTC 1239
BSNT_03192___ 1240 AGTCTATTCTGGAAGCATCAAACGAAAGAAGCGACAGTTATTGGATTATT 1289
|||||.||.||||||.||||||||||||||||||||.||||.||..|..|
RBAM_019340__ 1240 AGTCTGTTTTGGAAGAATCAAACGAAAGAAGCGACAATTATCGGTCTTCT 1289
BSNT_03192___ 1290 AGTCGGCCTTGCGGTTACGTTTATTGTGTATACCACTCAATCCGCACATG 1339
.|||||.|||...||.||.||.|..||..|||.|||.||||||||.||.|
RBAM_019340__ 1290 CGTCGGTCTTATCGTGACATTCACGGTAAATATCACCCAATCCGCCCACG 1339
BSNT_03192___ 1340 GCATTTATGAAGGATTCTGGGGATTGGCCGCCAACATGATCGCTGTGGTT 1389
|.||.||||||||.||.|||||.|||.||||.||||||...||.||..||
RBAM_019340__ 1340 GTATATATGAAGGCTTTTGGGGTTTGACCGCTAACATGGCAGCCGTTATT 1389
BSNT_03192___ 1390 ATCCTGAATCCGCTGTTCGTTAAAAACGCGGGATCCAATCCTGTCATTGA 1439
|||||.||.|||.|.||.||.|||||.||||..||.||..|.||||..||
RBAM_019340__ 1390 ATCCTTAACCCGTTTTTTGTAAAAAAAGCGGCTTCAAACGCCGTCAAAGA 1439
BSNT_03192___ 1440 AGGTTTATTTGGCAAAAAACAAGACG----CTAATCCA---AATCAAAAG 1482
.|||||||| |||.||| .|| ||.|||.| ||.|||||.
RBAM_019340__ 1440 CGGTTTATT---CAATAAA----GCGCCTTCTGATCAACTGAACCAAAAA 1482
BSNT_03192___ 1483 GGTGCATAA 1491
||.||.|||
RBAM_019340__ 1483 GGCGCTTAA 1491
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