Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03186 and RBAM_019330
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:04
# Commandline: needle
# -asequence dna-align/BSNT_03186.1.9828.seq
# -bsequence dna-align/RBAM_019330___yodE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03186-RBAM_019330___yodE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03186-RBAM_019330___yodE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03186
# 2: RBAM_019330___yodE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 946
# Identity: 427/946 (45.1%)
# Similarity: 427/946 (45.1%)
# Gaps: 377/946 (39.9%)
# Score: 1335.0
#
#
#=======================================
BSNT_03186 0 -------------------------------------------------- 0
RBAM_019330__ 1 TTGAATACGCAAGGATTGCACCATGTTACCGCATTTGCAAAAGATCCTGC 50
BSNT_03186 0 -------------------------------------------------- 0
RBAM_019330__ 51 TGAAAATCTTCGGTTTTATACTGAAGTGCTGGGTTTGCGGCTCGTTAAAA 100
BSNT_03186 0 -------------------------------------------------- 0
RBAM_019330__ 101 AAACCGTTAATTTTGACGACCCGGCCACTTATCACTTTTATTTCGGCAAC 150
BSNT_03186 0 -------------------------------------------------- 0
RBAM_019330__ 151 CAAAACGGAGAGCCGGGCACGATCATTACATTTTTTCCTTTTCAGGGAAG 200
BSNT_03186 0 -------------------------------------------------- 0
RBAM_019330__ 201 CCGCCCGGGAACCGTGGGAAAAGGGCAGGCCGGAAGAATTTATTTCTCCG 250
BSNT_03186 0 -------------------------------------------------- 0
RBAM_019330__ 251 TGCCGAAAGGAGCACTCGCGTTTTGGAAGCGCCGGCTTGAAGAAAACGGC 300
BSNT_03186 1 TTGTTTG---------------------GTGAAAAAGGTCTTATTTTTGA 29
||||.|| .||||.|||..|||.|.|||.|
RBAM_019330__ 301 TTGTCTGTAAAAGAACAGATCATGCTGTCTGAACAAGTGCTTCTCTTTAA 350
BSNT_03186 30 TGATACAGAAGACCTTCCGCTGGCGATCATGGAGGATGCGAAAAGCGGCA 79
|||||||||||||||.|||||.||.||.|||||.||||..|.||||||..
RBAM_019330__ 351 TGATACAGAAGACCTGCCGCTTGCCATAATGGAAGATGAAAGAAGCGGAC 400
BSNT_03186 80 AAAGCGAGTGGACGCCTGACGGG-ATCACAACAAATGAAGCAATTACGGG 128
|.||.||.|||||||||| |||| ||.||...|||.||.||.||.||.||
RBAM_019330__ 401 AGAGTGAATGGACGCCTG-CGGGCATTACTGAAAAAGATGCGATCACAGG 449
BSNT_03186 129 AATGAAAGGTGTGCTGCTATATTCCTA-CGACCCGCAGGCGACCATACAA 177
.||||.||||||.||.||.||.||.|| ||.||.| |.||.|||||..||
RBAM_019330__ 450 CATGAGAGGTGTTCTTCTGTACTCGTACCGTCCTG-AAGCAACCATTAAA 498
BSNT_03186 178 TTGTTAACGGAAAGCTTTGGATACACCAAAG--TGGCCGAAGAAGACCAG 225
||..|.|..|||.||||.||.|| ..||||| .|| .||||||.|.|||
RBAM_019330__ 499 TTTCTCATAGAACGCTTCGGTTA-TTCAAAGACAGG-AGAAGAACATCAG 546
BSNT_03186 226 ATTGTCAGACTGGCAACCTCAGCGGC-CG--TCGGCGGTGTCATTGATGT 272
||||||||.|| |||| ||.|.||| || ||||...|.|.||.|||||
RBAM_019330__ 547 ATTGTCAGGCT-GCAA--TCGGAGGCGCGGATCGGACATATTATAGATGT 593
BSNT_03186 273 CCATTTACACCCTGAAAAAAG-AGGAGTCGGAGGATATGGTACGGTACAC 321
..||.| |.|.|.||||.||| |||..||||.||.||.||.|||||.||.
RBAM_019330__ 594 TGATCT-CGCGCCGAAAGAAGCAGGTATCGGCGGTTACGGGACGGTTCAT 642
BSNT_03186 322 CATATAGCGTTTCGGAC-AAAGAAAAACGAACAGGCGAAATGGCTGCCGA 370
|||.|.||.||.||.|| |..|||||| ||.||||||.|||||..|...|
RBAM_019330__ 643 CATGTCGCTTTCCGCACTAGCGAAAAA-GAGCAGGCGGAATGGAAGGATA 691
BSNT_03186 371 TTATTGCTGAAAACCATCTGCCTTCGTCAGAAATTCTCGACAGGGAATAC 420
||.|||||||....|||||..||||.||.||.|||||.||||||...|||
RBAM_019330__ 692 TTCTTGCTGATTCTCATCTTGCTTCATCTGATATTCTTGACAGGTCTTAC 741
BSNT_03186 421 TTTACATCAGTTTATTTCAGGGAGAAAGGCGGTATCTTATTTGAAATTGC 470
|||||||||.|.|||||||||||.|..|||||.||.|||||||||||.||
RBAM_019330__ 742 TTTACATCAATCTATTTCAGGGAAAGCGGCGGCATTTTATTTGAAATGGC 791
BSNT_03186 471 CACAGATGAACCGGGCTTTATGACAGATGAAACGTTT-----TCT----- 510
.||.||||||||||||||||||||.||||||.|.||| |||
RBAM_019330__ 792 AACCGATGAACCGGGCTTTATGACGGATGAATCCTTTGAAAATCTCGGAA 841
BSNT_03186 511 --GAGCTAGGGACTTCCTTAAAACTGCCTGAATGGCTGGAGAAACATAGA 558
|||| |.||.||.||.|||||||||||..|.|||.|
RBAM_019330__ 842 CAGAGC------------TGAAGCTTCCGGAATGGCTGGAAGAGCATCG- 878
BSNT_03186 559 CA-CCAAATTACAGACATTTTACCTGAACTTTAA------------ 591
|| |||.|||||||...||.|.||..||.|..|.
RBAM_019330__ 879 CAGCCAGATTACAGCTGTTCTGCCCAAAATGGAGAAAGGAGAATGA 924
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