Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03185 and RBAM_019320
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:04
# Commandline: needle
# -asequence dna-align/BSNT_03185___yodD.1.9828.seq
# -bsequence dna-align/RBAM_019320___yodD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03185___yodD-RBAM_019320___yodD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03185___yodD-RBAM_019320___yodD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03185___yodD
# 2: RBAM_019320___yodD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 617
# Identity: 453/617 (73.4%)
# Similarity: 453/617 (73.4%)
# Gaps: 25/617 ( 4.1%)
# Score: 1593.5
#
#
#=======================================
BSNT_03185___ 1 ---ATGAAGCATATTTATGAAAAAGGAACATCTGACAACGTACTTTTGCT 47
|||||.|||.|.|.||||.|.|||||.||.||.||.||.||..||||
RBAM_019320__ 1 ATGATGAAACATGTGTTTGAACAGGGAACGTCAGAAAATGTTCTGCTGCT 50
BSNT_03185___ 48 GTTGCATGGCACGGGCGGTAATGAACACGATCTGCTTTCATTGGGGCGGT 97
.|||||.||.|||||.||.||||||||.|||||.||.||..|.||.||.|
RBAM_019320__ 51 TTTGCACGGAACGGGAGGAAATGAACATGATCTTCTGTCGCTCGGACGTT 100
BSNT_03185___ 98 TTATAGACCCTAATGCCCATTTGCTTGGTGTCAGAGGATCGGTGCTTGAA 147
||||.||.||.||.||...|.||||.||.|||||||||||.|||...|||
RBAM_019320__ 101 TTATCGATCCGAACGCAAGTCTGCTCGGGGTCAGAGGATCAGTGTCGGAA 150
BSNT_03185___ 148 AATGGAATGCCGCGATTTTTCAAACGTCTGAGTGAAGGAGTTTTTGATGA 197
||.||.|||||.||.|||||.||.||.||||..|||||.||.|||||.||
RBAM_019320__ 151 AACGGCATGCCCCGTTTTTTTAAGCGGCTGAAAGAAGGCGTATTTGACGA 200
BSNT_03185___ 198 AAAAGATCTTGTGGTGCGGACAAGAGAATTGAAAG-ATTTTATCGACGAG 246
.||||||.|..|.|..|||||...|||||| |||| |||||||.||.||.
RBAM_019320__ 201 GAAAGATTTAATTGAACGGACGGAAGAATT-AAAGAATTTTATTGATGAA 249
BSNT_03185___ 247 GCTGCAGAAACGCATCAGTTTGATC-GCGGCAAAGTGATTGCAGTCGGTT 295
||.||..|||.|.| |.|.||.|.| |.|..||.||||||||.|.|||.|
RBAM_019320__ 250 GCGGCGCAAATGTA-CGGATTCAGCAGAGAAAACGTGATTGCTGCCGGCT 298
BSNT_03185___ 296 ATTCAAACGGCGCAAACATTGCGGCAAGCCTGCTTTTTCATTATAAAGAT 345
|||||||||||||.||.|||||.|||||.||..|.|||||||||||||||
RBAM_019320__ 299 ATTCAAACGGCGCCAATATTGCAGCAAGTCTTTTGTTTCATTATAAAGAT 348
BSNT_03185___ 346 GTGTTAAAAGGGGCTATTCTGCATCATCCAATGGTTCCGATTCGGGGTAT 395
||..|.|||||.||..|||||||||||||.|||||.|||||.||.||..|
RBAM_019320__ 349 GTACTGAAAGGAGCGGTTCTGCATCATCCGATGGTGCCGATACGCGGAGT 398
BSNT_03185___ 396 CGAGCTGCCTGATATGGCGGGGCTCCCTGTTTTTATCGGTGCCGGGAAAT 445
..|||||||||||||||..|||.|.|||||.|||||||||||.||.|||.
RBAM_019320__ 399 GAAGCTGCCTGATATGGAAGGGATGCCTGTGTTTATCGGTGCGGGAAAAC 448
BSNT_03185___ 446 ACGATCCTCTTTGCACGAAGGAAGAATCAGAAGAGCTTTACCGCTATTTA 495
.|||||||||.||.||.||.||||||||.||.||||||||.|..|||
RBAM_019320__ 449 GCGATCCTCTATGTACAAAAGAAGAATCGGAGGAGCTTTATCAGTAT--- 495
BSNT_03185___ 496 CGTGACAGCGGGGCATCAGCCTCCGTTT------TCTGGCAGGACGGGGG 539
.||||||..|..||| ||.||||||| |.||||||||.||.||
RBAM_019320__ 496 -CTGACAGATGCCCAT--GCATCCGTTTCGCTTGTTTGGCAGGAGGGCGG 542
BSNT_03185___ 540 CCATCAGCTGACTCAGCATGAAGCTGAACAGGCTCGTGAA--TGGTACAA 587
.||||||||.||.|||||.|||||.||.|||||.| ||| |||||||.
RBAM_019320__ 543 TCATCAGCTCACACAGCAGGAAGCAGAGCAGGCAC--GAACCTGGTACAG 590
BSNT_03185___ 588 AGAGGCGATT-GTATAA 603
.|| |||||| .|||||
RBAM_019320__ 591 TGA-GCGATTCCTATAA 606
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