Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03182 and RBAM_019310
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:04
# Commandline: needle
# -asequence dna-align/BSNT_03182___yodC.1.9828.seq
# -bsequence dna-align/RBAM_019310___yodC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03182___yodC-RBAM_019310___yodC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03182___yodC-RBAM_019310___yodC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03182___yodC
# 2: RBAM_019310___yodC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 619
# Identity: 474/619 (76.6%)
# Similarity: 474/619 (76.6%)
# Gaps: 17/619 ( 2.7%)
# Score: 1794.0
#
#
#=======================================
BSNT_03182___ 1 ---ATGA----CGAATACTCTGGATGTTTTAAAAGCACGTGCATCTGTAA 43
|||| ||.|| |.||.||||||||||.|||.||||||||.|
RBAM_019310__ 1 ATGATGACATCCGTAT----TAGACGTTTTAAAAGAACGCGCATCTGTTA 46
BSNT_03182___ 44 AGGAATATGATACAAATGCCCCGATCTCTAAGGAGGAGCTGACTGAGCTA 93
|.|||||.||||.|.|.||....||..|.||.|||||..|.||.||.||.
RBAM_019310__ 47 AAGAATACGATAAAGACGCGGTCATTACAAAAGAGGAATTAACAGAACTC 96
BSNT_03182___ 94 TTAGACTTTGC--CGCTAAAGCGCCTTCTGCTTGGAACCTTCAGCATTGG 141
.|.||..|..| ||| ||||||||||.||.||||||||||||||||||
RBAM_019310__ 97 CTTGAAATCACAACGC--AAGCGCCTTCCGCCTGGAACCTTCAGCATTGG 144
BSNT_03182___ 142 CATTTTACAGTATTCCACAGCGATGAATCAAAAGCGGAGCTTCTTCCTGT 191
||||||..|||.||.|||||.||||||.|||||||.|..||.|||||.||
RBAM_019310__ 145 CATTTTCAAGTCTTTCACAGTGATGAAGCAAAAGCTGCCCTGCTTCCGGT 194
BSNT_03182___ 192 AGCGTATAATCAAAAACAAATCGTTGAGTCTTCTGCTGTTGTTGCCATTT 241
.||.|.||||||||||||.||..||||.||.||.||.|||.|||||.|||
RBAM_019310__ 195 TGCTTTTAATCAAAAACAGATTATTGATTCATCAGCAGTTATTGCCGTTT 244
BSNT_03182___ 242 TAGGCGATTTAAAGGCAAATGAAAACGGTGAAGAAGTTTATGCCGAATTA 291
|||||||.|||||.|||||||||||.||||||||.||||||||.|||.|.
RBAM_019310__ 245 TAGGCGACTTAAAAGCAAATGAAAATGGTGAAGACGTTTATGCTGAACTG 294
BSNT_03182___ 292 GC-AAGCCAAGGCTATATTACGGATGAAATCAAACAAACATTGCTCGGCC 340
|| .|| ||||||.||||.||.||.||.||.||||||||..|..|.||||
RBAM_019310__ 295 GCTGAG-CAAGGCAATATCACAGAAGAGATTAAACAAACGCTTTTAGGCC 343
BSNT_03182___ 341 AAATCAACGGTGCTTACCAAAGCGAGCAATTCGCACGTGATTCCGCTTTC 390
|.||.||||||||.|||||||..||.||.||.||.||||||||.||.||.
RBAM_019310__ 344 AGATTAACGGTGCATACCAAAATGATCAGTTTGCCCGTGATTCAGCATTT 393
BSNT_03182___ 391 TTAAATGCTTCTTTAGCTGCTATGCAGCTTATGATTGCCGCAAAAGCAAA 440
|.|||.|||||||||||.||.||||||||.|||.|||||||.||||||||
RBAM_019310__ 394 TCAAACGCTTCTTTAGCAGCAATGCAGCTGATGCTTGCCGCTAAAGCAAA 443
BSNT_03182___ 441 AGGTTATGACACTTGCGCAATTGGCGGATTTAACAAAGAGCAGTTCCAAA 490
|||.||.|||||||||||.||.||||||||.||.||||||||.|||...|
RBAM_019310__ 444 AGGCTACGACACTTGCGCGATCGGCGGATTCAATAAAGAGCAATTCGTTA 493
BSNT_03182___ 491 AGCAATTTGATATCAGTGAGCGCTATGTTCCGGTTATGCTAATTTCAATC 540
||.||||.||..|.||.|||||.|..||.||.||.|||||.|||||||||
RBAM_019310__ 494 AGGAATTCGACGTGAGCGAGCGTTTCGTGCCCGTCATGCTGATTTCAATC 543
BSNT_03182___ 541 GGCAAAGCAGTGAAGCCTGCGCATCAAAGCAACCGTCTGCCGCTTTCAAA 590
||.|||||.||.|||||.||||||.||||||||||.|||||..|.||.||
RBAM_019310__ 544 GGTAAAGCCGTTAAGCCGGCGCATAAAAGCAACCGGCTGCCTGTATCTAA 593
BSNT_03182___ 591 AGTATCAACTTGGCTGTAA 609
|||.|||||||||||||||
RBAM_019310__ 594 AGTGTCAACTTGGCTGTAA 612
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