Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03181 and RBAM_019300

See Amino acid alignment / Visit BSNT_03181 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:04
# Commandline: needle
#    -asequence dna-align/BSNT_03181___yodB.1.9828.seq
#    -bsequence dna-align/RBAM_019300___yodB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03181___yodB-RBAM_019300___yodB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03181___yodB-RBAM_019300___yodB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03181___yodB
# 2: RBAM_019300___yodB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 354
# Identity:     268/354 (75.7%)
# Similarity:   268/354 (75.7%)
# Gaps:          27/354 ( 7.6%)
# Score: 1024.0
# 
#
#=======================================

BSNT_03181___      1 GTGGGAAATACGATGTGCCCTAAAATGGAATCCGC--ATTCTCATTGCTG     48
                     ||||||.||||.|||||.|||||||||||||||||  .|||||.||  ||
RBAM_019300__      1 GTGGGATATACAATGTGTCCTAAAATGGAATCCGCTTTTTCTCTTT--TG     48

BSNT_03181___     49 GGAAAACGATGGAACGGTCTGATCATCCATGTGCTAATGGATGGGCCGAA     98
                     |||||.||.||||||||.||.||.||||||||.||.|||||.||||||||
RBAM_019300__     49 GGAAAGCGCTGGAACGGCCTCATTATCCATGTACTGATGGACGGGCCGAA     98

BSNT_03181___     99 ACGGTTTAAAGAGATAACGGAAACAATACCGATGATCAGCCAAAAAATGT    148
                     |||.||||||||.||.||.|||||.|||||||..|||||||||||||||.
RBAM_019300__     99 ACGATTTAAAGATATGACCGAAACGATACCGACAATCAGCCAAAAAATGC    148

BSNT_03181___    149 TGGCAGAGCGCTTGAAGGAGCTTGAACAAAACGAGATTGTCGAACGGCAG    198
                     |.||.|||||..|.||.|||||.||||||||.||.||||||||.||.|||
RBAM_019300__    149 TCGCGGAGCGGCTCAAAGAGCTGGAACAAAATGAAATTGTCGAGCGTCAG    198

BSNT_03181___    199 GTTCTCCCTGAAACGCCGGTCAAAGTCATCTACACGCTGACTGAAAAAGG    248
                     ||.||.||||||||.||.|||||||||||.||.|..||||||||.|||||
RBAM_019300__    199 GTGCTGCCTGAAACACCTGTCAAAGTCATTTATAAACTGACTGATAAAGG    248

BSNT_03181___    249 AACAGCGCTTCAAGCTGTATTTCAAGAGATGCAGGCATGGGCCGATCA-A    297
                     ....||.||.|||||.||.|||||.||.|||||...||||||.|| || .
RBAM_019300__    249 CTTGGCCCTGCAAGCCGTTTTTCAGGAAATGCAAAAATGGGCAGA-CAGT    297

BSNT_03181___    298 TTTTGCGAGCCTGG------------TGACACAGTGTGTGAAGAAGAGAA    335
                     |||||||||||.||            .||||||   |||||.|      |
RBAM_019300__    298 TTTTGCGAGCCCGGGGGATCTGCCAACGACACA---TGTGATG------A    338

BSNT_03181___    336 ATAA    339
                     ||||
RBAM_019300__    339 ATAA    342


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