Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01722 and RBAM_019290
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:24
# Commandline: needle
# -asequence dna-align/BSNT_01722___yhgB.1.9828.seq
# -bsequence dna-align/RBAM_019290___yoaQ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01722___yhgB-RBAM_019290___yoaQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01722___yhgB-RBAM_019290___yoaQ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01722___yhgB
# 2: RBAM_019290___yoaQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 423
# Identity: 202/423 (47.8%)
# Similarity: 202/423 (47.8%)
# Gaps: 159/423 (37.6%)
# Score: 388.0
#
#
#=======================================
BSNT_01722___ 1 ATGAAGCATACT------TGCCC-------AGTCTGCGGGTTTAAGGGAT 37
|||..|..||.| |.||| | |.|||||.|||||.||||
RBAM_019290__ 1 ATGTTGGTTAGTGAGTTGTACCCTTGTTTGA-TATGCGGATTTAAAGGAT 49
BSNT_01722___ 38 TGG---------CTG-----AACCGCCATATGATCATGAAGGCAATCATT 73
|.| |.| |||.||.| || |||| || ||.||||
RBAM_019290__ 50 TAGAGACAAGTCCCGTTTATAACGGCGA-AT-ATCA--AA---AAACATT 92
BSNT_01722___ 74 CTCATGAAATCTGCCCGTGCTGCGGTTTTCAGTTCGGATTTGATGATTAC 123
|||.||.||.||.||||||||.|||.|.||||
RBAM_019290__ 93 ----TGATATTTGTCCCTGCTGCGGGTTTGAATTCG-------------- 124
BSNT_01722___ 124 GAGATGCAGCACGAGG---ATGATTCATA--TTTAGAG-CCATCGGAAAG 167
|.|.||| ||||| |||| |.|| .||||.| ..||.|.||.|
RBAM_019290__ 125 --GCTACAG--CGAGGACCATGA--CGTAAGCTTAGGGTTTATTGTAACG 168
BSNT_01722___ 168 C---ATCAT----------CGCC--------TATA--GAAAAAACTGGCT 194
| ||||| ||.| |||| |.|||.|.|||.|
RBAM_019290__ 169 CCTGATCATTTAATTGAAGCGGCATTTCAGTTATACCGGAAACAGTGGAT 218
BSNT_01722___ 195 TGCTGAAGGG-----TGCGTCATTTTTTCTCCTGAATGCT-TCCC----- 233
|| |||| ||...| |.|||||||| .||||.| ||||
RBAM_019290__ 219 TG----AGGGAGGAATGAAAC-TATTTTCTCC-AAATGATGTCCCGGCGG 262
BSNT_01722___ 234 AAAACATCTGCAAAAAGCGA-----------------ATAGAGTATTAAG 266
|| ||.||||| .|| ||....||||||.
RBAM_019290__ 263 AA------TGTAAAAA-TGATCATTTCCTTACATTCGATGCTTTATTAAA 305
BSNT_01722___ 267 GCA--TCATCTGATTGAGCAGCTGAAACAGATCAATGTTCATCTTCCATC 314
||| |.|...|.|||| |.||.||.|.||.||||.||.||.|
RBAM_019290__ 306 GCAATTAAAAGGCTTGA--ACCTCAATCTGAACAATTTTGATAT------ 347
BSNT_01722___ 315 ATAA------------------- 318
|||
RBAM_019290__ 348 -TAATGGTTTTTATGACGAGTAA 369
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