Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03179 and RBAM_019280
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:03
# Commandline: needle
# -asequence dna-align/BSNT_03179___yodA.1.9828.seq
# -bsequence dna-align/RBAM_019280___yodA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03179___yodA-RBAM_019280___yodA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03179___yodA-RBAM_019280___yodA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03179___yodA
# 2: RBAM_019280___yodA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 405
# Identity: 285/405 (70.4%)
# Similarity: 285/405 (70.4%)
# Gaps: 30/405 ( 7.4%)
# Score: 945.5
#
#
#=======================================
BSNT_03179___ 1 ATGCCATTATTGCGTTTTGATGTAATTGAAGGCC---ATGACG------- 40
|||||||||.|.||||||||.||.|||||||||| ||||||
RBAM_019280__ 1 ATGCCATTACTTCGTTTTGACGTTATTGAAGGCCGGGATGACGCAGCATT 50
BSNT_03179___ 41 AAAAATCGCTGCAATTGTTATTAGATACTGCTCACCAAGCGATGGTTGAA 90
||||| || |||.|.|||||.||.||..|.||.||||||.||
RBAM_019280__ 51 AAAAA-------AA---TTACTGGATACCGCCCATTACGCCATGGTTAAA 90
BSNT_03179___ 91 GCGTTTGGTGTTCCGGAAAGAGACCGTTATCAAATTGTCCATCAGCATC- 139
||.||||..||.||.|.||..|||||||||||.||.||.||.|||||||
RBAM_019280__ 91 GCTTTTGACGTCCCTGTAACGGACCGTTATCAGATCGTTCACCAGCATCG 140
BSNT_03179___ 140 -CCGCAAACGAGCTTATAATCCAGGATA-CGGGATTAGGGTTTC-AGAGA 186
||.| |.||||||||.||..|.|||| ||||.| .|||||| |.|||
RBAM_019280__ 141 GCCTC--ATGAGCTTATCATTGAAGATACCGGGCT--CGGTTTCAAAAGA 186
BSNT_03179___ 187 ACCAAGGATATGGTCATCATTAGCA-TGACAAGCAAAGCAAGAACCGAAA 235
|.|||.|||.|.||||||||.|||| ||.| ||||||||..|.||||||.
RBAM_019280__ 187 AGCAAAGATCTTGTCATCATCAGCATTGTC-AGCAAAGCGCGCACCGAAC 235
BSNT_03179___ 236 GCCAAAAGGAAAAATTGTATGCTCTGCTTGCTGAAAGGCTAGAAGAAAAA 285
..|||||.||||..||.|||...|||.|.|||||...|||..||..|.||
RBAM_019280__ 236 ATCAAAAAGAAACGTTATATCAACTGATGGCTGATCAGCTTAAAACAGAA 285
BSNT_03179___ 286 TGCGGAATTTCCCCTGAAGACCTCATGGTATCTATTACTGAGAATGGTGA 335
|||||.||.||.||.||.|||.|||||.|.||.|||||.||.||.||..|
RBAM_019280__ 286 TGCGGCATATCACCCGAGGACGTCATGATTTCCATTACAGAAAACGGGAA 335
BSNT_03179___ 336 CGCAGACTGGAGTTTTGGTCTCGGTGAGGCGCAATTTTTGAATGGAAAAC 385
|||.||.|||||.||.||.||.||||||||.||.|||||.|..||.||||
RBAM_019280__ 336 CGCCGATTGGAGCTTCGGGCTTGGTGAGGCTCAGTTTTTAACCGGGAAAC 385
BSNT_03179___ 386 TATAA 390
|.|||
RBAM_019280__ 386 TGTAA 390
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