Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03179 and RBAM_019280

See Amino acid alignment / Visit BSNT_03179 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:03
# Commandline: needle
#    -asequence dna-align/BSNT_03179___yodA.1.9828.seq
#    -bsequence dna-align/RBAM_019280___yodA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03179___yodA-RBAM_019280___yodA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03179___yodA-RBAM_019280___yodA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03179___yodA
# 2: RBAM_019280___yodA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 405
# Identity:     285/405 (70.4%)
# Similarity:   285/405 (70.4%)
# Gaps:          30/405 ( 7.4%)
# Score: 945.5
# 
#
#=======================================

BSNT_03179___      1 ATGCCATTATTGCGTTTTGATGTAATTGAAGGCC---ATGACG-------     40
                     |||||||||.|.||||||||.||.||||||||||   ||||||       
RBAM_019280__      1 ATGCCATTACTTCGTTTTGACGTTATTGAAGGCCGGGATGACGCAGCATT     50

BSNT_03179___     41 AAAAATCGCTGCAATTGTTATTAGATACTGCTCACCAAGCGATGGTTGAA     90
                     |||||       ||   |||.|.|||||.||.||..|.||.||||||.||
RBAM_019280__     51 AAAAA-------AA---TTACTGGATACCGCCCATTACGCCATGGTTAAA     90

BSNT_03179___     91 GCGTTTGGTGTTCCGGAAAGAGACCGTTATCAAATTGTCCATCAGCATC-    139
                     ||.||||..||.||.|.||..|||||||||||.||.||.||.||||||| 
RBAM_019280__     91 GCTTTTGACGTCCCTGTAACGGACCGTTATCAGATCGTTCACCAGCATCG    140

BSNT_03179___    140 -CCGCAAACGAGCTTATAATCCAGGATA-CGGGATTAGGGTTTC-AGAGA    186
                      ||.|  |.||||||||.||..|.|||| ||||.|  .|||||| |.|||
RBAM_019280__    141 GCCTC--ATGAGCTTATCATTGAAGATACCGGGCT--CGGTTTCAAAAGA    186

BSNT_03179___    187 ACCAAGGATATGGTCATCATTAGCA-TGACAAGCAAAGCAAGAACCGAAA    235
                     |.|||.|||.|.||||||||.|||| ||.| ||||||||..|.||||||.
RBAM_019280__    187 AGCAAAGATCTTGTCATCATCAGCATTGTC-AGCAAAGCGCGCACCGAAC    235

BSNT_03179___    236 GCCAAAAGGAAAAATTGTATGCTCTGCTTGCTGAAAGGCTAGAAGAAAAA    285
                     ..|||||.||||..||.|||...|||.|.|||||...|||..||..|.||
RBAM_019280__    236 ATCAAAAAGAAACGTTATATCAACTGATGGCTGATCAGCTTAAAACAGAA    285

BSNT_03179___    286 TGCGGAATTTCCCCTGAAGACCTCATGGTATCTATTACTGAGAATGGTGA    335
                     |||||.||.||.||.||.|||.|||||.|.||.|||||.||.||.||..|
RBAM_019280__    286 TGCGGCATATCACCCGAGGACGTCATGATTTCCATTACAGAAAACGGGAA    335

BSNT_03179___    336 CGCAGACTGGAGTTTTGGTCTCGGTGAGGCGCAATTTTTGAATGGAAAAC    385
                     |||.||.|||||.||.||.||.||||||||.||.|||||.|..||.||||
RBAM_019280__    336 CGCCGATTGGAGCTTCGGGCTTGGTGAGGCTCAGTTTTTAACCGGGAAAC    385

BSNT_03179___    386 TATAA    390
                     |.|||
RBAM_019280__    386 TGTAA    390


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