Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03173 and RBAM_019260
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:03
# Commandline: needle
# -asequence dna-align/BSNT_03173___yozR.1.9828.seq
# -bsequence dna-align/RBAM_019260___yozR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03173___yozR-RBAM_019260___yozR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03173___yozR-RBAM_019260___yozR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03173___yozR
# 2: RBAM_019260___yozR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 513
# Identity: 336/513 (65.5%)
# Similarity: 336/513 (65.5%)
# Gaps: 87/513 (17.0%)
# Score: 1096.0
#
#
#=======================================
BSNT_03173___ 1 ATGTTTGAGTGGAACAAGTACTTTCCTTTCCACAATCAATTTTCTAAAGA 50
.|||||||.||||||||.||.|||||.|||||.|||||.||.||||||||
RBAM_019260__ 1 GTGTTTGATTGGAACAAATATTTTCCCTTCCAAAATCAGTTCTCTAAAGA 50
BSNT_03173___ 51 AGCATTAAAAAAAGCTGATCCGAAAGAAGTTGAAACGTATGTCAATCGTG 100
|.|.||.|||||.||||||||||||||.||.||.||.||||||||.||.|
RBAM_019260__ 51 AACGTTTAAAAATGCTGATCCGAAAGATGTCGAGACATATGTCAACCGAG 100
BSNT_03173___ 101 TGATGGAAAGTGTGTTCGGCAGTGATTATGCGGCTCAATTTCCTTTCCGC 150
||||||||||.||.||||||...|.||||||.|..|||||.|||||.|||
RBAM_019260__ 101 TGATGGAAAGCGTATTCGGCGCCGGTTATGCCGGACAATTCCCTTTTCGC 150
BSNT_03173___ 151 GATCC--TCTCCCCCAAAAAGAACATCCCGCCAAACC---TGATGCAAAA 195
||||| |.| ||||||| .|||.|.|| .||.||..||
RBAM_019260__ 151 GATCCCATGT---CCAAAAA--------TGCCGAGCCGGTCGAAGCGGAA 189
BSNT_03173___ 196 CCTGATG-TCAAACCTGATATTGATATATTCGAAACAGCAGACCATGTGT 244
|| | .|||.||.||.|||||..|.||.||||||.|.||.|||||.|
RBAM_019260__ 190 CC----GCCCAAGCCGGAAATTGACCTGTTTGAAACATCCGATCATGTTT 235
BSNT_03173___ 245 TTGTAAAGGTGCCAATCAGCGAAGAATGGCTG--GAACAAG--------- 283
|| ||||| |||..|.| |||||||
RBAM_019260__ 236 TT----------------GCGAA-AATTCCCGCCGAACAAGAGGAACTCG 268
BSNT_03173___ 284 ------TGAGAATCAAACACACATCTCACGAATTATGGTTG--GAAAACC 325
|.||.||.||.||.|||||.||| |...|.|||| ||.|||
RBAM_019260__ 269 ACCGTATCAGGATTAAGCATACATCACAC--AGCCTCGTTGTAGAGAAC- 315
BSNT_03173___ 326 TCCCAAGAGCAGATCATCCG---------AAAAAAGTAAA----CCTTCC 362
||||| ||.| ||||||| ||| ||||||
RBAM_019260__ 316 -------AGCAG----TCTGGGAGAAGGAAAAAAAG-AAATCGTCCTTCC 353
BSNT_03173___ 363 TTGTTTAGTCAAACGCAAAGGAACAAAAGCCGTCTATAAGGATGGCCTTC 412
..|..|.||||||||.||||||||||||||.||||||||.||.||..|..
RBAM_019260__ 354 GAGCCTCGTCAAACGGAAAGGAACAAAAGCAGTCTATAAAGACGGGATGA 403
BSNT_03173___ 413 TGGAAGTCATG-TTTCAAAAGCAGCAAGACTACAATATGTCCGAGGTAGA 461
|.|||||.||| |||||||| |||.|||||||||||.|.||.||.||.||
RBAM_019260__ 404 TTGAAGTTATGTTTTCAAAA-CAGGAAGACTACAATCTATCGGAAGTGGA 452
BSNT_03173___ 462 AATCATCCGATAA 474
.||..|..|||||
RBAM_019260__ 453 GATTTTAAGATAA 465
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