Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03161 and RBAM_019180
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:02
# Commandline: needle
# -asequence dna-align/BSNT_03161___yojK.1.9828.seq
# -bsequence dna-align/RBAM_019180___yojK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03161___yojK-RBAM_019180___yojK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03161___yojK-RBAM_019180___yojK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03161___yojK
# 2: RBAM_019180___yojK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1322
# Identity: 840/1322 (63.5%)
# Similarity: 840/1322 (63.5%)
# Gaps: 214/1322 (16.2%)
# Score: 2582.0
#
#
#=======================================
BSNT_03161___ 1 ATGGCAAATGTATTAATGATCGGTTTCCCCGGTGAAGGGCATATTAATCC 50
||||||||||||||.||||||||.||.||.||.|||||.|||||.|||||
RBAM_019180__ 1 ATGGCAAATGTATTGATGATCGGCTTTCCGGGAGAAGGCCATATCAATCC 50
BSNT_03161___ 51 CTCTATCGGTGTGATGAAGGAGCTGAAATCTCGGGGAGAA----AACATT 96
.|||.|.||.||..|.||.||.||||| ||.|.|| |||||.
RBAM_019180__ 51 GTCTTTAGGCGTCGTAAAAGAACTGAA------GGCAAAAGGGGAACATG 94
BSNT_03161___ 97 ACG--TACTACGCAGTGAAGGAATATAAAGAA-AAAATCAC--------- 134
.|| ||.||||..|||||||||||| .|||| ||||||.|
RBAM_019180__ 95 TCGTATATTACGGCGTGAAGGAATAT-GAGAACAAAATCGCGTCAAGCGG 143
BSNT_03161___ 135 AGCTCTTGATATAGAGTTTCGTGAGTATCATGATTTCAGGGGAGATTACT 184
||| .||.||.|||||.|||.|.||||||.|...||||.|.|
RBAM_019180__ 144 AGC---------GGAATTCCGTGAATATGAAGATTTCCGTAAAGATGAAT 184
BSNT_03161___ 185 TCGGGAAAAACGCAACCGGTGATGAAGAAAGAGACTTTACTGA------- 227
||||.|||||||||||.|||||||||.|..|.|||..|||.||
RBAM_019180__ 185 TCGGAAAAAACGCAACGGGTGATGAACAGCGGGACGCTACCGAGTTTTTG 234
BSNT_03161___ 228 -----AATGATCTGCGCTTTTTTGAAAAGCTGTAAAGATATTGCG-ACT- 270
|||||| ||.|..||....|||||| || |||
RBAM_019180__ 235 CTATTAATGAT-TGAGACTTCCAAAAAAGC-------------CGCACTC 270
BSNT_03161___ 271 CATATTTATGAGGAAGTCAAACATGAATCGTATGATTATGTCATATATGA 320
|.||||..|||||||||.|||.|||||||.||.||.||..||.|.|||||
RBAM_019180__ 271 CGTATTCTTGAGGAAGTAAAAGATGAATCCTACGACTACATCCTGTATGA 320
BSNT_03161___ 321 TCACCATCTTCTCGCGGGTAAAGTCATCG---CCAACCTGCTGAAGCTGC 367
|||.|||.||||.||.|| |||.| ||| ..||||.||||||.||||
RBAM_019180__ 321 TCATCATTTTCTGGCAGG--AAGGC-TCGTGAGAAACCAGCTGAAACTGC 367
BSNT_03161___ 368 CAAGATTTTCATTGTGTACAACCTTTGCGATGAATGAGGAATTTGCGAAG 417
|...||.||||.|.|||||.||.|||||.||||||||.|.||||...||.
RBAM_019180__ 368 CGGCATATTCACTTTGTACGACATTTGCAATGAATGAAGCATTTATTAAA 417
BSNT_03161___ 418 GAAATG-------ATGGGAGCGTACATGAAA----GGATCACTTGAAGAT 456
|||.|| | ||| ||| |.|||| ||.||.
RBAM_019180__ 418 GAAGTGTTTTCAAA--------TAC---AAACCTTGTATCA---GAGGAA 453
BSNT_03161___ 457 TCGCCTCATTAT--GAATCATACC--AG----CAGCTTGCAGAAACTTTA 498
||..|||||||| |..|.||||| || ||||..|| |.
RBAM_019180__ 454 TCATCTCATTATCCGGCTTATACCGAAGCGGTCAGCCGGC--------TC 495
BSNT_03161___ 499 AATGCTGATTTTCA-AGCAGAGATCAAGAAGCCATTTGATGTTTTTTTAG 547
||||..|| .|||| .|||||.||.||.|.|||.|.||||.||||.|.|.
RBAM_019180__ 496 AATGAAGA-ATTCAGCGCAGACATTAAAACGCCGTATGATATTTTCTCAA 544
BSNT_03161___ 548 CTGATGGTGACTTGACA--------ATTGTCTTTACATCAAGGGGATTTC 589
.|||.|| || ||.||.|||||.|||||.|..||||
RBAM_019180__ 545 ATGACGG--------CAGAAAAACCATCGTATTTACTTCAAGAGCGTTTC 586
BSNT_03161___ 590 AGCCACTGGCTGAGCAATTTGGCGAGCGATATGTATTTGTCGGTCCTTCC 639
||||....|..||..|.||||||||....|||.|.|||||||||||.|||
RBAM_019180__ 587 AGCCGAAAGAAGAAGAGTTTGGCGATTCTTATCTCTTTGTCGGTCCGTCC 636
BSNT_03161___ 640 ATTACAGAAAGAGC--CGGAAACAATGATTTCCCATTTGATCAGATTGAC 687
||.||.|||||.|| ||| ..||| ||||||||.|||||.|||.||||.
RBAM_019180__ 637 ATAACCGAAAGGGCGGCGG-CTCAA-GATTTCCCGTTTGAACAGCTTGAA 684
BSNT_03161___ 688 AATGAAAACGTGCTGTTTATTTCAATGGGAACCATTTTTAATAATCAAAA 737
...|||||.||.|||||||||||||||||.||.||||||||.|||||.||
RBAM_019180__ 685 GGAGAAAAAGTCCTGTTTATTTCAATGGGCACGATTTTTAACAATCAGAA 734
BSNT_03161___ 738 GCAGTTTTTTAATCAATGCCTTGAAGTGTGTAAG-GATTTTGACGGTAAA 786
|.|.||.||||||.|||||.|..|||.| ||.|| .|.|||.||||.|||
RBAM_019180__ 735 GGAATTGTTTAATAAATGCTTAAAAGCG-GTCAGAAACTTTAACGGAAAA 783
BSNT_03161___ 787 GTTGTGCTTTCCATCGGCAAGCATATTAAAACAAGTGAGTTAAACGACAT 836
|..||..|.||.||||||||.|||.||.|..|....|||.|..|.||.||
RBAM_019180__ 784 GCCGTCATGTCAATCGGCAAACATCTTGATCCTGCGGAGCTTGATGAAAT 833
BSNT_03161___ 837 TCCGGAGAATTTCATTGT-ACGCCCGTATGTCCCTCAGCTTGAGATCTTG 885
|||.||||||.||||||| |.| ||.|||||.||.||||||||||||.||
RBAM_019180__ 834 TCCTGAGAATGTCATTGTCAAG-CCTTATGTTCCGCAGCTTGAGATCCTG 882
BSNT_03161___ 886 AAAAGAGCCAGCTTATTTGTGACACACGGCGGAATGAACAGCACAAGTGA 935
||.|||||...|||||||.|.||.|||||||||||||||||.||.||.||
RBAM_019180__ 883 AAGAGAGCGGACTTATTTATCACTCACGGCGGAATGAACAGTACGAGCGA 932
BSNT_03161___ 936 AGGTTTGTATTTTGAAACCCCGCTCGTTGTCATTCCGATGGGAGGCGACC 985
|||..|.||.|...||||||||.|..|.||||||||||||||.|..||.|
RBAM_019180__ 933 AGGGCTTTACTACAAAACCCCGATGATCGTCATTCCGATGGGCGCAGATC 982
BSNT_03161___ 986 AATTTGTTGTCGCAGATCAGGTGGAAAAAGTCGGTGCAGGAAAAGTGTTA 1035
|.||.|..||||.|...||.||||||||....||.||.||.|||.||||.
RBAM_019180__ 983 AGTTCGCCGTCGGAAGCCAAGTGGAAAACACGGGCGCGGGCAAAATGTTT 1032
BSNT_03161___ 1036 AAAAAAGAAGAATTATCTGAAAGC----CTGCTGAAAGAGACGATACAAG 1081
|||||||||| ||.|.|.||| |||||.|..||..|.|||.|||
RBAM_019180__ 1033 AAAAAAGAAG----ATGTAACAGCGGAACTGCTTACTGAAGCAATAAAAG 1078
BSNT_03161___ 1082 AAGT-AATGAATAATCGTTCGTATGCTGAA---AAGGCAAAA------GA 1121
||.| |..||| |||| ||||| .||.||||| ||
RBAM_019180__ 1079 AATTGAGCGAA-AATC---------CTGAATATCAGACAAAAGCTTCTGA 1118
BSNT_03161___ 1122 AATTGGACAATCACTGAAAGCGGCAGGCGGCTCTAAAAAAGCGGCC---- 1167
|||.|||.||||.|||||||||||.||||| |..|.||||..|
RBAM_019180__ 1119 AATCGGAGAATCCCTGAAAGCGGCCGGCGG----AGCACAGCGTGCAGCG 1164
BSNT_03161___ 1168 -----GATAGCATTCTTGAAGCTGT-AAAACAAAAAACTCAATCAGCAAA 1211
||||||| ||||..|| |||||
RBAM_019180__ 1165 GAATTGATAGCA-----GAAGACGTGAAAAC------------------- 1190
BSNT_03161___ 1212 TGCATAG--------------- 1218
|||..||
RBAM_019180__ 1191 TGCCGAGACCCGGGTTCTGTAA 1212
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