Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03159 and RBAM_019170
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:02
# Commandline: needle
# -asequence dna-align/BSNT_03159___yojL.1.9828.seq
# -bsequence dna-align/RBAM_019170___yojL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03159___yojL-RBAM_019170___yojL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03159___yojL-RBAM_019170___yojL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03159___yojL
# 2: RBAM_019170___yojL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1318
# Identity: 889/1318 (67.5%)
# Similarity: 889/1318 (67.5%)
# Gaps: 149/1318 (11.3%)
# Score: 2908.5
#
#
#=======================================
BSNT_03159___ 1 ATGAAAAAGAAGATTGTAGCCGGCTTGGCTGTTTCTGCAGTTGTTGGGTC 50
|||||.||.||.||.|.||||||..|||||||.||||||||..| |.|
RBAM_019170__ 1 ATGAAGAAAAAAATCGCAGCCGGACTGGCTGTATCTGCAGTAAT---GAC 47
BSNT_03159___ 51 GTCGA---TGGCCGCAGCA-CCCGCGGAAGCAAAAACGATAAAAGTAAAA 96
.||.| |.|||| .||| |||||.|||||||||||.||..||||||||
RBAM_019170__ 48 TTCAACCTTCGCCG-TGCATCCCGCTGAAGCAAAAACCATTCAAGTAAAA 96
BSNT_03159___ 97 AGCGGTGACTCTCTTTGGAAACTTTCCCGCCAGTATGATACGACAATATC 146
|||||.||||||||||||||.||||||||.||.|||.||||.|..||.||
RBAM_019170__ 97 AGCGGCGACTCTCTTTGGAAGCTTTCCCGGCAATATCATACAAGTATTTC 146
BSNT_03159___ 147 AGCTCTGAAATCCGAAAACAAATTGAAATCAACGGTGCTTTATGTCGGAC 196
|||.|||.|..|.|||||.|||.|||||||||||.|.||..|....||||
RBAM_019170__ 147 AGCCCTGCAGGCGGAAAATAAACTGAAATCAACGATACTCCACCCAGGAC 196
BSNT_03159___ 197 AAAGTCTTAAGGTTCCTGAAAGCAGCAAAAAAAGCACGACATCCCCATCT 246
|..|.||..|..||||.||..||||| .|||| ||| |
RBAM_019170__ 197 AGCGGCTGCACATTCCCGACGGCAGC------GGCAC-ACA--------T 231
BSNT_03159___ 247 AATTCAA----GCAAAACGTCAA--------------CATACACAGTTGC 278
|| || ||||||.|..|| |.|||||||||.|
RBAM_019170__ 232 AA---AACGGGGCAAAAGGGAAAACGAAGCACGGGTGCCTACACAGTTAC 278
BSNT_03159___ 279 ATATGGTGATTCCCTATGGATGATTGCTAAAAATCATAAAATGAGTGTTT 328
|||.||.||.||..|||||.||||.||.|||||..|.||||||||.||||
RBAM_019170__ 279 ATACGGAGACTCGTTATGGGTGATCGCAAAAAAATACAAAATGAGCGTTT 328
BSNT_03159___ 329 CTGAGCTTAAAAGCTTAAACAGCCTGAG--CAG-TGACCTGATTCGTCCG 375
|||||||.|.||||.|.|||.|..|||| ||| || |.||...|||.
RBAM_019170__ 329 CTGAGCTGAGAAGCCTGAACCGTTTGAGTTCAGATG---TCATCTATCCC 375
BSNT_03159___ 376 GGGCAAAAGCTTAAGATCAAAGGGAC--------------AAGCAGTTCA 411
||.||.||.||.||.||.||||||.| |.|.||
RBAM_019170__ 376 GGCCAGAAACTGAAAATTAAAGGGTCTGCCGGCGGCACGGACGGAG---- 421
BSNT_03159___ 412 AGCGGATCAAATGGATCAAA----GAAAAACAGCGGTTCCAATTCTTCAG 457
|||| ||.|..|| |||| ||.||| .|||
RBAM_019170__ 422 -GCGG--CAGACAGA-CAAAGCCTGATAAA-GGCG--------------- 451
BSNT_03159___ 458 GTTCTTCAAAAAGTACATATACGGTCAAGCTTGGTGACTCACTGTGGAAA 507
||..|.|.||.||.||.||.||||..||||||||.|||||||||
RBAM_019170__ 452 ------CATTAGGGACTTACACTGTGAAGCCGGGTGACTCGCTGTGGAAA 495
BSNT_03159___ 508 ATCGCAAACAGCTTAAA----TATGACTGTAGCCGAATTAAAAACTTTAA 553
|||||.|| |.||| .||.||..|.||||||.|.||||...|.|
RBAM_019170__ 496 ATCGCCAA----TCAAACCGGGATCACCATCGCCGAACTGAAAAAGCTGA 541
BSNT_03159___ 554 ATGGCTTAACATCAGATACACTTTATCCTAAACAGGTGCTCAAAATAAAA 603
||...|||||||||||.|..||.|||||.||.||.|||.|.||.||.|||
RBAM_019170__ 542 ATCAATTAACATCAGACATGCTGTATCCGAATCAAGTGTTAAAGATCAAA 591
BSNT_03159___ 604 GGAAGCAGTTCGCCTAAGAACGGAAACAGCGGTTCCAAAAAGCCGTCAAA 653
| ||||..|..|.|.||||||||||||..|.|.|..|||.||..|
RBAM_019170__ 592 G------GTTCTTCACATAGCGGAAACAGCGGCACAACACCGCCATCTCA 635
BSNT_03159___ 654 CTCCAATCCCTC-AAAAAG--AACGACGTACAAGGTAAAAGCAGGCGATT 700
.||.|||||.|| .|.||| |.|.||.|||||.||||||||||||||||
RBAM_019170__ 636 TTCAAATCCTTCTGAGAAGCCATCCACTTACAAAGTAAAAGCAGGCGATT 685
BSNT_03159___ 701 CGCTGTGGAAAATTGCAAATCGGCTCGGAGTCACTGTCCAAAGCATCCGT 750
|.||.||||||||.||.||||||.||||..||||.|..||...||||.|.
RBAM_019170__ 686 CCCTCTGGAAAATAGCTAATCGGTTCGGCATCACCGCTCAGCTCATCAGA 735
BSNT_03159___ 751 GATAAAAACAATTTATCATCGGATGTGCTGCAAATCGGGCAGGTTCTGAC 800
||.|||||.||.||..||.|.||||||||.||||||||.||.||||||..
RBAM_019170__ 736 GAAAAAAATAAATTGACAACTGATGTGCTTCAAATCGGACAAGTTCTGGT 785
BSNT_03159___ 801 TATTTCTGGAGCATCAAAATCTA----ATCCT-----TCA---------- 831
.|||...|||.|...||||.| | ||||| |||
RBAM_019170__ 786 GATTAACGGAACGGGAAAAAC-AGAAGATCCTGTGCGTCAGCCGGATAAC 834
BSNT_03159___ 832 AATCCGACAAAGCCAACAAAGCCAAAAGATAACTCAGGGTCAAACATTC- 880
||.|||..||||||||..||||| ||..|||| .|.|||.|.|
RBAM_019170__ 835 AAACCGGTAAAGCCAAACAAGCC----GAATACTC----CCGAACCTCCG 876
BSNT_03159___ 881 -AAATAGGCTCGAAGATTGACAGAATGATCACG-GAAGCGAAAAAATATG 928
..|.|||.||.||||||||||||||||| |.| ||.|||||||||.|||
RBAM_019170__ 877 GTGACAGGGTCAAAGATTGACAGAATGAT-AGGCGAGGCGAAAAAACATG 925
BSNT_03159___ 929 TCGGAGTGCCTTACCGATGGGGCGGAAACACGCCTGCCGGTTTTGATTGC 978
||||.||.||||||||.|||||.||.||.||||||||.||.||.||||||
RBAM_019170__ 926 TCGGCGTTCCTTACCGCTGGGGAGGCAATACGCCTGCGGGCTTCGATTGC 975
BSNT_03159___ 979 AGCGGCTTCATTTATTACCTCATTAATAATGTATCATCTATATCAAGATT 1028
|||||.|.|||.||||||||..|.|||||.|||...|||.|.||..|..|
RBAM_019170__ 976 AGCGGTTACATCTATTACCTTTTAAATAAGGTAAGCTCTGTTTCCCGTCT 1025
BSNT_03159___ 1029 GAGTACGGCAGGATATTGGAATGTCATGCAGAAAGTCAGCCAGCCGTCAG 1078
|||.|||||.||||||||||||...|||.|..|..|||||||||||||||
RBAM_019170__ 1026 GAGCACGGCCGGATATTGGAATACGATGAAACATATCAGCCAGCCGTCAG 1075
BSNT_03159___ 1079 TAGGAGACTTTGTCTTCTTTACCACATATAAATCCGGCCCGTCTCATATG 1128
.|||.|||||||||||||||||.|||||||||.|.|||||.|||||||||
RBAM_019170__ 1076 CAGGCGACTTTGTCTTCTTTACGACATATAAAGCGGGCCCTTCTCATATG 1125
BSNT_03159___ 1129 GGGATTTATCTAGGCGGCGGTGATTTTATTCATGCAAGCTCATCGGGCGT 1178
||.||.|||.|||||||.||.|||||||||||.||||||||.||.||.||
RBAM_019170__ 1126 GGAATGTATTTAGGCGGAGGAGATTTTATTCACGCAAGCTCCTCCGGGGT 1175
BSNT_03159___ 1179 CGACATTTCCAATCTCAGCAATTCGTATTGG-AAACAGCGGTACTTGGGC 1227
.||..||||.||..|.||||||.|||||||| |||.||| .||.||.||.
RBAM_019170__ 1176 TGAAGTTTCAAACTTAAGCAATCCGTATTGGAAAAAAGC-TTATTTAGGA 1224
BSNT_03159___ 1228 GCAAGAAGTTATTTTTAA 1245
||..|.||||||||||||
RBAM_019170__ 1225 GCGCGCAGTTATTTTTAA 1242
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