Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03157 and RBAM_019160

See Amino acid alignment / Visit BSNT_03157 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:02
# Commandline: needle
#    -asequence dna-align/BSNT_03157___yojM.1.9828.seq
#    -bsequence dna-align/RBAM_019160___yojM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03157___yojM-RBAM_019160___yojM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03157___yojM-RBAM_019160___yojM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03157___yojM
# 2: RBAM_019160___yojM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 638
# Identity:     425/638 (66.6%)
# Similarity:   425/638 (66.6%)
# Gaps:          94/638 (14.7%)
# Score: 1404.5
# 
#
#=======================================

BSNT_03157___      1 ATGCACCGTCTCTTGCTGTTGATGATGC---------TGACGGCACTGGG     41
                     |||.|.|||||||||||.||..|.||||         |.|||   ||   
RBAM_019160__      1 ATGAATCGTCTCTTGCTTTTTCTCATGCTCGTATCAATTACG---CT---     44

BSNT_03157___     42 AGTTGCCGGATGCGGACAAAAAAAACCTCC----AGACC--CTCCTAACC     85
                       ||| |||.|||||                   |||||  |||||    
RBAM_019160__     45 --TTG-CGGCTGCGG---------------GGGGAGACCCGCTCCT----     72

BSNT_03157___     86 GGGTGCCG--GAAAAAAAAGTGG--------------TTGAAACGTCAGC    119
                       ||.|||  .||||||.| |||              |.|||.|.||.||
RBAM_019160__     73 --GTTCCGCCCAAAAAACA-TGGGGAAAGCCGCGCATTGGAAGCATCTGC    119

BSNT_03157___    120 GTTTGGTCATCATGTCCAG-CTGGTCAATCGTGAAGGGAAAGCAGTCGGT    168
                     .|...||.|.|||| ||.| ||..||||||...|.||.|||.|..||||.
RBAM_019160__    120 ATACCGTGAGCATG-CCGGACTCATCAATCAAAACGGAAAAACGATCGGA    168

BSNT_03157___    169 TTTATAGAGATCAAAGAATCAGATGATGAAGGCCTC-GATATTCATATTT    217
                     |.|||.||..|.|..|||||.||||||||||| .|| ||.||||||||  
RBAM_019160__    169 TATATCGAAGTGAGGGAATCTGATGATGAAGG-GTCAGACATTCATAT--    215

BSNT_03157___    218 CCGCAAACAGC-------CTGCGTCCAGGTGCTTCTCTCGGTTTTCATAT    260
                          |.||||       ||||..||.||..||||||||||.||||||||
RBAM_019160__    216 -----ATCAGCGGGGCATCTGCCGCCCGGCACTTCTCTCGGGTTTCATAT    260

BSNT_03157___    261 TTATGAGAAAGGTTCTTGTGTCAGG--CCGGATTTTGAATCAGCGGGCGG    308
                     ||||||.|||||..|  .|||||||  ||.|||||.||||||||.|||||
RBAM_019160__    261 TTATGAAAAAGGGAC--ATGTCAGGCACCTGATTTCGAATCAGCCGGCGG    308

BSNT_03157___    309 TCCCTTTAATCCACTGAACAAAGAACACGGCTTCAATAATCCGATGGGGC    358
                     |||.||.||.||..||||||||||||||||||||||.|||||||||||.|
RBAM_019160__    309 TCCGTTCAACCCTTTGAACAAAGAACACGGCTTCAACAATCCGATGGGTC    358

BSNT_03157___    359 ATCATGCCGGAGATCTGCCGAACCTTGAAGTCGGTGCTGATGGAAAGGTA    408
                     ||||.|||||.|||||.||.||.||||||||.||.||||||||.||.||.
RBAM_019160__    359 ATCACGCCGGGGATCTCCCCAATCTTGAAGTGGGGGCTGATGGTAAAGTG    408

BSNT_03157___    409 GATGTCATAATGAATGCGCCTGACACTTCACTGAAAAAAGGAAGTAAACT    458
                     ||||||||.|||||.|||||..|.||||||.|.|||.||||.||.|.|||
RBAM_019160__    409 GATGTCATTATGAACGCGCCGCAAACTTCATTAAAAGAAGGGAGCAGACT    458

BSNT_03157___    459 AAATATTCTCGACGAGGACGGAAGTGCATTTATTATTCATGAACAAGCGG    508
                     .|...|.||||||..|||||||||.||.||..|.|||||||||||..|||
RBAM_019160__    459 CAGCCTGCTCGACCGGGACGGAAGCGCGTTCGTCATTCATGAACATACGG    508

BSNT_03157___    509 ACGATTATCTGACAAACCCAAGCGGCAATTCCGGTGCGCGTATTGTCTGC    558
                     ||||||||.||||||||||.|||||.||||||||.||..|.||.|.||||
RBAM_019160__    509 ACGATTATTTGACAAACCCGAGCGGAAATTCCGGAGCCAGAATCGCCTGC    558

BSNT_03157___    559 GGAGCCCTTTTGGGAAATAACGAG-AAGCAGTAA----    591
                     |...||||     ||.|.||.|.| ..||||..|    
RBAM_019160__    559 GCTCCCCT-----GACAAAAAGCGCCCGCAGGGAATGA    591


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