Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03157 and RBAM_019160
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:02
# Commandline: needle
# -asequence dna-align/BSNT_03157___yojM.1.9828.seq
# -bsequence dna-align/RBAM_019160___yojM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03157___yojM-RBAM_019160___yojM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03157___yojM-RBAM_019160___yojM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03157___yojM
# 2: RBAM_019160___yojM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 638
# Identity: 425/638 (66.6%)
# Similarity: 425/638 (66.6%)
# Gaps: 94/638 (14.7%)
# Score: 1404.5
#
#
#=======================================
BSNT_03157___ 1 ATGCACCGTCTCTTGCTGTTGATGATGC---------TGACGGCACTGGG 41
|||.|.|||||||||||.||..|.|||| |.||| ||
RBAM_019160__ 1 ATGAATCGTCTCTTGCTTTTTCTCATGCTCGTATCAATTACG---CT--- 44
BSNT_03157___ 42 AGTTGCCGGATGCGGACAAAAAAAACCTCC----AGACC--CTCCTAACC 85
||| |||.||||| ||||| |||||
RBAM_019160__ 45 --TTG-CGGCTGCGG---------------GGGGAGACCCGCTCCT---- 72
BSNT_03157___ 86 GGGTGCCG--GAAAAAAAAGTGG--------------TTGAAACGTCAGC 119
||.||| .||||||.| ||| |.|||.|.||.||
RBAM_019160__ 73 --GTTCCGCCCAAAAAACA-TGGGGAAAGCCGCGCATTGGAAGCATCTGC 119
BSNT_03157___ 120 GTTTGGTCATCATGTCCAG-CTGGTCAATCGTGAAGGGAAAGCAGTCGGT 168
.|...||.|.|||| ||.| ||..||||||...|.||.|||.|..||||.
RBAM_019160__ 120 ATACCGTGAGCATG-CCGGACTCATCAATCAAAACGGAAAAACGATCGGA 168
BSNT_03157___ 169 TTTATAGAGATCAAAGAATCAGATGATGAAGGCCTC-GATATTCATATTT 217
|.|||.||..|.|..|||||.||||||||||| .|| ||.||||||||
RBAM_019160__ 169 TATATCGAAGTGAGGGAATCTGATGATGAAGG-GTCAGACATTCATAT-- 215
BSNT_03157___ 218 CCGCAAACAGC-------CTGCGTCCAGGTGCTTCTCTCGGTTTTCATAT 260
|.|||| ||||..||.||..||||||||||.||||||||
RBAM_019160__ 216 -----ATCAGCGGGGCATCTGCCGCCCGGCACTTCTCTCGGGTTTCATAT 260
BSNT_03157___ 261 TTATGAGAAAGGTTCTTGTGTCAGG--CCGGATTTTGAATCAGCGGGCGG 308
||||||.|||||..| .||||||| ||.|||||.||||||||.|||||
RBAM_019160__ 261 TTATGAAAAAGGGAC--ATGTCAGGCACCTGATTTCGAATCAGCCGGCGG 308
BSNT_03157___ 309 TCCCTTTAATCCACTGAACAAAGAACACGGCTTCAATAATCCGATGGGGC 358
|||.||.||.||..||||||||||||||||||||||.|||||||||||.|
RBAM_019160__ 309 TCCGTTCAACCCTTTGAACAAAGAACACGGCTTCAACAATCCGATGGGTC 358
BSNT_03157___ 359 ATCATGCCGGAGATCTGCCGAACCTTGAAGTCGGTGCTGATGGAAAGGTA 408
||||.|||||.|||||.||.||.||||||||.||.||||||||.||.||.
RBAM_019160__ 359 ATCACGCCGGGGATCTCCCCAATCTTGAAGTGGGGGCTGATGGTAAAGTG 408
BSNT_03157___ 409 GATGTCATAATGAATGCGCCTGACACTTCACTGAAAAAAGGAAGTAAACT 458
||||||||.|||||.|||||..|.||||||.|.|||.||||.||.|.|||
RBAM_019160__ 409 GATGTCATTATGAACGCGCCGCAAACTTCATTAAAAGAAGGGAGCAGACT 458
BSNT_03157___ 459 AAATATTCTCGACGAGGACGGAAGTGCATTTATTATTCATGAACAAGCGG 508
.|...|.||||||..|||||||||.||.||..|.|||||||||||..|||
RBAM_019160__ 459 CAGCCTGCTCGACCGGGACGGAAGCGCGTTCGTCATTCATGAACATACGG 508
BSNT_03157___ 509 ACGATTATCTGACAAACCCAAGCGGCAATTCCGGTGCGCGTATTGTCTGC 558
||||||||.||||||||||.|||||.||||||||.||..|.||.|.||||
RBAM_019160__ 509 ACGATTATTTGACAAACCCGAGCGGAAATTCCGGAGCCAGAATCGCCTGC 558
BSNT_03157___ 559 GGAGCCCTTTTGGGAAATAACGAG-AAGCAGTAA---- 591
|...|||| ||.|.||.|.| ..||||..|
RBAM_019160__ 559 GCTCCCCT-----GACAAAAAGCGCCCGCAGGGAATGA 591
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