Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03151 and RBAM_019100

See Amino acid alignment / Visit BSNT_03151 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:01
# Commandline: needle
#    -asequence dna-align/BSNT_03151___yocS.1.9828.seq
#    -bsequence dna-align/RBAM_019100___yocS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03151___yocS-RBAM_019100___yocS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03151___yocS-RBAM_019100___yocS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03151___yocS
# 2: RBAM_019100___yocS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 992
# Identity:     726/992 (73.2%)
# Similarity:   726/992 (73.2%)
# Gaps:          43/992 ( 4.3%)
# Score: 2555.0
# 
#
#=======================================

BSNT_03151___      1 ATGGACAT--CATTAGAAAAATAAGTCATTTTGCAGGACAAACCTTTGGC     48
                     ||||| ||  | |.|.|||||||||....|||||.||.||||||||||||
RBAM_019100__      1 ATGGA-ATGGC-TGAAAAAAATAAGCGGGTTTGCGGGCCAAACCTTTGGC     48

BSNT_03151___     49 ATATGGGTCATTGT-TTTTGCAGTGCTGGGATTTTCTTTCCCATCTTTAT     97
                     .|.|||||.||.|| |||.||.|| .|.|||||..|.|.|||...|||.|
RBAM_019100__     49 TTGTGGGTTATCGTCTTTGGCGGT-TTAGGATTCGCCTGCCCTGATTTGT     97

BSNT_03151___     98 TTACGTGGATCAGTTCTTATATTACGATTTTTCTTGGCATTATCATGTTT    147
                     ||.|.|||||||||||||||||.||||||||.|||||.|||||.||||||
RBAM_019100__     98 TTTCTTGGATCAGTTCTTATATGACGATTTTCCTTGGTATTATTATGTTT    147

BSNT_03151___    148 GGGATGGGCCTTACACTGCAAGCCGATGATTTCAAAGAGCTGGTCAGAAA    197
                     ||||||||.|||||.||.|||||.||.|||||.|||||..|..|||||||
RBAM_019100__    148 GGGATGGGGCTTACTCTTCAAGCAGACGATTTTAAAGAATTAATCAGAAA    197

BSNT_03151___    198 GCCTTGGCAAGTTATTATTGGAGTAATAGCTCAGTATACGATCATGCCGC    247
                     |||||||||.||..|.||.|||||....||.||||.||||||.|||||||
RBAM_019100__    198 GCCTTGGCATGTCGTAATCGGAGTCGCTGCCCAGTTTACGATTATGCCGC    247

BSNT_03151___    248 T--CGTTGCTTTCGGCCTCGCATTTGGGCTTCATCTTCCAGCTGAAATCG    295
                     |  ||  ||||||.|..|..||.|.|||||.|..||.||.||.|||||||
RBAM_019100__    248 TTACG--GCTTTCTGTTTATCAATCGGGCTCCGCCTCCCCGCAGAAATCG    295

BSNT_03151___    296 CAGTTGGTGTTATTCTTGTCGGCTGCTGTCCCGGGGGAACTGCATCTAAT    345
                     |.|..||.||.|||||.|||||.||||||||.||.||.||.|||||.||.
RBAM_019100__    296 CCGCGGGCGTCATTCTGGTCGGATGCTGTCCGGGCGGTACGGCATCAAAC    345

BSNT_03151___    346 GTTATGACATTCTTAGCAAAAGGAAATACTGCCCTTTCTGTTGCGGTTAC    395
                     ||.|||||.||.||.||.|||||.|||||.||.||||||||||||||.||
RBAM_019100__    346 GTCATGACGTTTTTGGCGAAAGGCAATACGGCGCTTTCTGTTGCGGTCAC    395

BSNT_03151___    396 GACAATTTCTACCTTATTGGCACCTGTTGTAACACCG----TTGTTGATT    441
                     .||.||.||.||.||..|.||.|||.|||||||.|||    ||    |||
RBAM_019100__    396 CACGATCTCAACATTGCTTGCTCCTATTGTAACGCCGGCACTT----ATT    441

BSNT_03151___    442 ATGCTGTTTGCCAAAGAATGGCTTCCTGTCTCGCCGGGGTCTTTGTTTAT    491
                     |||||||||||.|||||.|||||.||.||.||....||.||..|||||.|
RBAM_019100__    442 ATGCTGTTTGCGAAAGAGTGGCTCCCCGTTTCTTTCGGCTCACTGTTTGT    491

BSNT_03151___    492 CTCAATCTTACAGGCGGTTTTATTTCCGATCATTGCAGGTCTGATTGTCA    541
                     .||.||..|.||.||.||..|.||.||||||.||...||..|||||||.|
RBAM_019100__    492 TTCCATTATGCAAGCCGTGCTTTTGCCGATCGTTCTCGGGGTGATTGTGA    541

BSNT_03151___    542 AAATGTTTTTCAGAAAACAAGTGGCAAAAGCCGTACATGCCCTTCCGCTT    591
                     |..||||.||||.||||||.||.|.|.|||||||.||.||.|||||.||.
RBAM_019100__    542 AGCTGTTCTTCAAAAAACAGGTCGGACAAGCCGTGCACGCGCTTCCTCTC    591

BSNT_03151___    592 GTTTCTGTCATTGGCATCGTTGCGATTGTCTCAGCTGTCGTCAGCGGCAA    641
                     ||.||.||.||.||||||||.||||||||.||..||||||||||||..||
RBAM_019100__    592 GTGTCGGTAATCGGCATCGTAGCGATTGTATCCTCTGTCGTCAGCGTAAA    641

BSNT_03151___    642 TCGGGAAAATCTGCTTCAATCGGGGTTGCTCATTTTTTCAGTTGTTATCC    691
                     |||.||..|||||||||||||.||..||||.|||.|.||.||.||.|||.
RBAM_019100__    642 TCGTGAGCATCTGCTTCAATCAGGACTGCTGATTGTGTCTGTCGTCATCT    691

BSNT_03151___    692 TGCATAATGGTATCGGTTATTTACTTGGGTTTCTTTGTGCAAAGCTTTTA    741
                     |.|||||.||.|||||.|||||..|.||.||.||...|||||||||.||.
RBAM_019100__    692 TACATAACGGAATCGGATATTTGTTAGGATTCCTGACTGCAAAGCTGTTC    741

BSNT_03151___    742 AAAATGGATTACCCGTCTCAAAAAGCGATTGCAATCGAAGTCGGCATGCA    791
                     |||||||||||..|.||.||||||||||||||.|||||||||||.|||||
RBAM_019100__    742 AAAATGGATTATGCTTCACAAAAAGCGATTGCGATCGAAGTCGGAATGCA    791

BSNT_03151___    792 AAACTCCGGGCTTGGGGCTGCACTTGCCACGGCTCATTTCTCACCGCTAT    841
                     |||||||||.||.||.||.||..||||.||.||.||||||||.||..|.|
RBAM_019100__    792 AAACTCCGGACTGGGCGCAGCGATTGCGACAGCGCATTTCTCCCCTTTGT    841

BSNT_03151___    842 CTGCCGTACCAAGCGCAATATTCAGTGTGTGGCATAACCTTTCAGGTTCT    891
                     |.|||||.||.||||||||.|||||..|.|||||.||.||.||.||.|||
RBAM_019100__    842 CAGCCGTGCCGAGCGCAATTTTCAGCATATGGCACAATCTGTCGGGGTCT    891

BSNT_03151___    892 ATGCTTGCAACATATTGGTC---CAAAAAAGTGAAAAA-------GATAC    931
                     .|.|||||.||.||.|||||   .|||||||.||||||       || |.
RBAM_019100__    892 GTTCTTGCCACCTACTGGTCTAAGAAAAAAGAGAAAAACAGCGCCGA-AG    940

BSNT_03151___    932 AAGCTGGATCCGAAAGCAGCAA----TC---TATCACTTTAA    966
                     |||..|.|   |||| |.||||    ||   |.|||   |||
RBAM_019100__    941 AAGAAGAA---GAAA-CGGCAAAGATTCCGTTTTCA---TAA    975


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03151 and RBAM_019100

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
