Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03149 and RBAM_019080

See Amino acid alignment / Visit BSNT_03149 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:00
# Commandline: needle
#    -asequence dna-align/BSNT_03149___sodF.1.9828.seq
#    -bsequence dna-align/RBAM_019080___sodF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03149___sodF-RBAM_019080___sodF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03149___sodF-RBAM_019080___sodF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03149___sodF
# 2: RBAM_019080___sodF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 862
# Identity:     625/862 (72.5%)
# Similarity:   625/862 (72.5%)
# Gaps:          41/862 ( 4.8%)
# Score: 2197.0
# 
#
#=======================================

BSNT_03149___      1 ATGAAACGTGAATCTTATCAAACGGAGATGTTCAATTGGTGTGAAGCCCT     50
                     ||||||||..|..||||||||||.||||||.|.||||||||||||.||.|
RBAM_019080__      1 ATGAAACGGCACGCTTATCAAACCGAGATGCTGAATTGGTGTGAAACCTT     50

BSNT_03149___     51 GAAAGATCA---GATTCAAAAGCGAGGACAGCTTGACCAGTTTGAAGATC     97
                     |||.||.||   .||||   |||.|||.|.|.|.||.|..||.|..|..|
RBAM_019080__     51 GAAGGAACAAGTTATTC---AGCAAGGTCGGTTCGATCGCTTCGCGGCAC     97

BSNT_03149___     98 AAATCGACAAGATGATTGAGGCTCTGGAAGATGACCAAACAACAGAAGAA    147
                     ||||||||..|||..||.|..|.||..|.|||||...|...||.||.|..
RBAM_019080__     98 AAATCGACCGGATTTTTCACACCCTTCAGGATGATGGATTTACGGAGGCG    147

BSNT_03149___    148 GATTGGTATAAACAGGCCGCTGCCCTTTACCGGGATATTACAGAATCAGA    197
                     ||.|||||..|||||||..|.||.|||||||||||.|||||.|||.|.||
RBAM_019080__    148 GAATGGTACGAACAGGCATCGGCACTTTACCGGGACATTACTGAACCCGA    197

BSNT_03149___    198 TGATACAAGTGAAAGACGCGCA-----TATGTCCCTATAGGGAAACACGT    242
                     .||..|...|||     |||||     |||||.||.||.||.||.||.||
RBAM_019080__    198 AGAGCCGGATGA-----GCGCAGAGCTTATGTGCCGATCGGCAAGCATGT    242

BSNT_03149___    243 GCTGCCAAAGCTTCCTTACAAATACTCCGCCTTAGAACCTTATATTTCAC    292
                     .||.||.||.||.|||||||..||.|||||..|.|||||.|||||||||.
RBAM_019080__    243 CCTCCCTAAACTGCCTTACAGTTATTCCGCACTGGAACCGTATATTTCAA    292

BSNT_03149___    293 GCGATATTATGGTCCTTCATCATACAAAACATCATCAAAGCTATGTCGAT    342
                     |.||.||||||...|||||.|||||||||||.|||||.||||||||.||.
RBAM_019080__    293 GAGAGATTATGAAACTTCACCATACAAAACACCATCAGAGCTATGTTGAC    342

BSNT_03149___    343 GGCCTGAACAAAGCAGAATCAGAGCTTAAAAAAGCGAGAGCA-ACAAAGA    391
                     ||.|||||.|||||||||...|||||.|||||||||||| || ||.||..
RBAM_019080__    343 GGTCTGAATAAAGCAGAACTGGAGCTCAAAAAAGCGAGA-CAGACGAAAC    391

BSNT_03149___    392 ATTATGACTTAATCACTCATTGGGAAAGAGAGCTTGCGTTCCATGGAGCA    441
                     |.||.||||||.|..|.||||||||..|..|..|.|||||.||.||.||.
RBAM_019080__    392 AGTACGACTTAGTGGCGCATTGGGAGCGGCAATTGGCGTTTCACGGCGCG    441

BSNT_03149___    442 GGCCATTATTTGCACAGTATTTTTTGGTTTTCTATGCATCCAAACGGAAA    491
                     |||||||||||||||||||||||.||||||||.|||.|||||||||||||
RBAM_019080__    442 GGCCATTATTTGCACAGTATTTTCTGGTTTTCGATGAATCCAAACGGAAA    491

BSNT_03149___    492 ACGGCGTCCTACAGGGGCATTGTTCCAAATGATAGACCTTTCATTTGGAA    541
                     |.|.||.||.||.|||||..|.||.||||||||.||....|||||.||||
RBAM_019080__    492 AAGACGGCCGACGGGGGCGCTCTTTCAAATGATTGATGCGTCATTCGGAA    541

BSNT_03149___    542 GCTATTCCGCTTTTAAAGAACATTTTACCCAGGCCGCTAAAAAAGTGGAA    591
                     |||||||||||||||||||.||.|||.|.||.||.||.||||||||.|||
RBAM_019080__    542 GCTATTCCGCTTTTAAAGAGCAATTTTCTCAAGCGGCGAAAAAAGTCGAA    591

BSNT_03149___    592 GGCGTCGGCTGGGCCATTCTGGTCTGGGCACCTCGATCAGGACGGCTGGA    641
                     ||.|||||||||||.||.||.||||||||.||.||..|.||.||||||||
RBAM_019080__    592 GGAGTCGGCTGGGCTATCCTAGTCTGGGCGCCGCGCGCCGGGCGGCTGGA    641

BSNT_03149___    642 GATTTTAACGGCAGAAAAACACCAG---------CAATGGGATGTGATCC    682
                     ||||||..|.||.||.||.||.|||         ||.|||||.||.||  
RBAM_019080__    642 GATTTTGGCCGCTGAGAAGCATCAGCTCTACAGCCAGTGGGACGTCAT--    689

BSNT_03149___    683 CCCTTT--TACCGCTTGACGTATGGGAGCATGCCTACTATTTGCAATACA    730
                     .|||||  |.|||||.||.||.|||||.||.||.||.||.||.|||||.|
RBAM_019080__    690 TCCTTTGCTTCCGCTGGATGTGTGGGAACACGCTTATTACTTACAATATA    739

BSNT_03149___    731 AAAATGACCGGGCCAGC-TATGTCGATCACTGGTGGAATGTCGTGGATTG    779
                     ||||.|||||.| |.|| ||.||.|||||.||||||||||||||.|||||
RBAM_019080__    740 AAAACGACCGAG-CGGCTTACGTGGATCAATGGTGGAATGTCGTTGATTG    788

BSNT_03149___    780 GCGCGAGGCTGAAAAACGTTTTGAGCAGGCAAAAGAA----GTCGTTTGG    825
                     |||.|||||.||.|||||.||.|||||.||    |.|    ||..|.|||
RBAM_019080__    789 GCGGGAGGCGGAGAAACGGTTCGAGCAAGC----GCACCGCGTAATATGG    834

BSNT_03149___    826 AAGCTCTATTAA    837
                     ..|||.||||||
RBAM_019080__    835 CCGCTTTATTAA    846


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03149 and RBAM_019080

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
