Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03137 and RBAM_018990

See Amino acid alignment / Visit BSNT_03137 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:00
# Commandline: needle
#    -asequence dna-align/BSNT_03137.1.9828.seq
#    -bsequence dna-align/RBAM_018990.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03137-RBAM_018990.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03137-RBAM_018990.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03137
# 2: RBAM_018990
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 290
# Identity:     141/290 (48.6%)
# Similarity:   141/290 (48.6%)
# Gaps:         118/290 (40.7%)
# Score: 305.0
# 
#
#=======================================

BSNT_03137         1 ---ATGCTTCCGACTAACATCAATATTTCTCATC-----TCAA----GAC     38
                        |||.||                |||| ||||     ||||    ||.
RBAM_018990        1 ATGATGTTT----------------TTTC-CATCCGTTATCAACTTTGAG     33

BSNT_03137        39 TAACTCGATA---------------------GG------------CACCG     55
                     ||    .|||                     ||            |||||
RBAM_018990       34 TA----TATAAAAATGAACGGAATCAGCGGCGGAGCAACTTTTAACACCG     79

BSNT_03137        56 GCTCATCCCTTACCTTTGGTTCTGCGGAGTTAAGGA-ACAGGCGCTCTGC    104
                     ||||.|||.|||    ||||      |||  ||  | ||||     |.||
RBAM_018990       80 GCTCTTCCGTTA----TGGT------GAG--AA--ACACAG-----CAGC    110

BSNT_03137       105 TATCAAAAGAAATAACGGTTTTGGGGAACAAAA-------TGCAGATGTT    147
                     .|..|||||||||.|.||.|..||.||||||||       ||||    .|
RBAM_018990      111 CAATAAAAGAAATGAAGGGTACGGTGAACAAAACGGTGATTGCA----CT    156

BSNT_03137       148 ATTGTCATGGTCATTCCGAT--TGAATCAATTGATGA--CCG---TGATG    190
                     .|||||   |||||.||.||  |||.|  ||.|||||  |.|   ||||.
RBAM_018990      157 GTTGTC---GTCATCCCTATCATGAGT--ATCGATGATTCAGATCTGATA    201

BSNT_03137       191 G--GGCAGATGCACTCAGTATGAAAATCAATCATCAATAA    228
                     |  ||||.| |||      |..||.||||..|.||.||||
RBAM_018990      202 GATGGCACA-GCA------AACAAGATCAGCCTTCGATAA    234


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