Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03136 and RBAM_018980
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:00
# Commandline: needle
# -asequence dna-align/BSNT_03136___yocL.1.9828.seq
# -bsequence dna-align/RBAM_018980___yocL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03136___yocL-RBAM_018980___yocL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03136___yocL-RBAM_018980___yocL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03136___yocL
# 2: RBAM_018980___yocL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 550
# Identity: 218/550 (39.6%)
# Similarity: 218/550 (39.6%)
# Gaps: 263/550 (47.8%)
# Score: 514.5
#
#
#=======================================
BSNT_03136___ 1 ATGAAAAAAATGTTCCGGTCGCTGATCAGGCATTGCTTGAAACCAGAACT 50
.|||||||||| ..||| .||..||| ||.|||
RBAM_018980__ 1 TTGAAAAAAAT---------AATGA-AAGAGATT--TTCAAA-------- 30
BSNT_03136___ 51 TGACAAACTGCGTGAATGTGAAGAA--AGACTCTCAGTGATTGAGAAACA 98
|||.||.||||| |||||| |||| ..|.||.|||||..
RBAM_018980__ 31 ----AAAGTGTGTGAA---GAAGAATTAGAC-----CGGCTTAAGAAAGT 68
BSNT_03136___ 99 AAAACAA----------------------------------AGCAGCAAA 114
..||||| |||.|||||
RBAM_018980__ 69 GGAACAACAGCTTGATGAGCTTCAGGATAAGTGTCATTTTGAGCCGCAAA 118
BSNT_03136___ 115 C------AGGAGTCTGAAGAAACCTATATACATATTGA-AACGCTGAATG 157
| ||| .|||.||||.|||.|.|||||||| .||| |.||.|
RBAM_018980__ 119 CGGTGGAAGG----GGAAAAAACATATGTCCATATTGAGCACG-TCAAAG 163
BSNT_03136___ 158 TCGAAAAAATTGACTATCATCTTGAATTCGGCGAGCTGACCATTGATGAA 207
|.||.||..||||.||..||.||||.||.|...||||||..||.||.||.
RBAM_018980__ 164 TGGACAAGGTTGAGTACAATATTGATTTTGAAAAGCTGAGTATAGAAGAG 213
BSNT_03136___ 208 CTGAGCGGCAGATTAAATATAGGCGCAACCTATTATATACCGCC------ 251
||||||||.|...|.|||||.|||||.||.||..|||.||||.|
RBAM_018980__ 214 CTGAGCGGTATGCTGAATATCGGCGCCACTTACCATACACCGGCGCACAG 263
BSNT_03136___ 252 ------AGAAG----------AGAA-----GGACA------AAAA----- 269
|.||| |||| ||||| ||||
RBAM_018980__ 264 GCTCAAACAAGCCTGCGCTGAAGAATTTCGGGACAACCGGCAAAATGATG 313
BSNT_03136___ 270 GTGCCAACGAAA------ACCCGAAGCACCATCGACGCC----------A 303
.|||.||.|||| |..|.|||||.|| |||.|| |
RBAM_018980__ 314 CTGCGAAAGAAAAAAGACAGACAAAGCAGCA--GACACCCACTTTGAGGA 361
BSNT_03136___ 304 GCGGTCACGATCCGTTCAAA----------------AAGGCA---GTAG- 333
|.||| .|||.||| |.|||| ||||
RBAM_018980__ 362 GTGGT-------GGTTTAAAACTTTCTTACTTGCGTACGGCATACGTAGC 404
BSNT_03136___ 333 -------------------------------------------------- 333
RBAM_018980__ 405 GAAAGCCATTTCCCTTGCGGAGATGGCTTTTTATTTTGAATTGCCATTGA 454
BSNT_03136___ 333 -------------------------------------------------- 333
RBAM_018980__ 455 GCAGCGTACTTTATCAGTATGATAAAATGAAAGAATCAAAGACAAAGTGA 504
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