Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03116 and RBAM_018900
See
Amino acid alignment /
Visit
BSNT_03116 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:58
# Commandline: needle
# -asequence dna-align/BSNT_03116___yocA.1.9828.seq
# -bsequence dna-align/RBAM_018900___yocA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03116___yocA-RBAM_018900___yocA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03116___yocA-RBAM_018900___yocA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03116___yocA
# 2: RBAM_018900___yocA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 690
# Identity: 540/690 (78.3%)
# Similarity: 540/690 (78.3%)
# Gaps: 36/690 ( 5.2%)
# Score: 2131.0
#
#
#=======================================
BSNT_03116___ 1 GTGAAGAAAAAGAGAAAAGGCTGTTTCGCTGCTGCGGGTTTTATGATGAT 50
|||.|||||||||.||||||||||||||||||.||||||.||||||||||
RBAM_018900__ 1 GTGGAGAAAAAGAAAAAAGGCTGTTTCGCTGCCGCGGGTCTTATGATGAT 50
BSNT_03116___ 51 TTTTGTCTTTGTCATCG----CCTCTTTTTTATTGGTCCTGCTTTTTTTC 96
.|.|||.||||||||.| |.||||..|.||| |||||.||||..
RBAM_018900__ 51 ATGTGTTTTTGTCATGGTTTCCTTCTTCCTCATT----CTGCTATTTTCA 96
BSNT_03116___ 97 AACCGGGATTTAGTCAAAAAACTTCCGATCGATACAAAAACGATTGTTTT 146
||....||.|...||||||..||||||.|.|||...||..||||.||..|
RBAM_018900__ 97 AATAATGAATGGCTCAAAAGTCTTCCGTTTGATGTCAAGCCGATCGTCCT 146
BSNT_03116___ 147 GGAACGTTTAACCGATTACAAACC-CTTGGTGGAAGAAGAGCT---TGAA 192
.|||||..|.||.||||||||||| ||| ||.|||||.||.|| ||||
RBAM_018900__ 147 TGAACGGCTGACAGATTACAAACCGCTT-GTTGAAGACGAACTGGATGAA 195
BSNT_03116___ 193 AGCCAAGGACTCTCTAATTATACATCACTCATATTAGGCATGATGTATCA 242
| ||||||||.|.||.||||||||.||..||.|.||||||||.|||||
RBAM_018900__ 196 A---AAGGACTCACCAAATATACATCGCTTGTACTCGGCATGATATATCA 242
BSNT_03116___ 243 GGAGTCAAAAGGAAAAGGCAATGATCCCATGCAGTCCTCTGAATCTCTGG 292
||||||||||||||.|||.|||||||||||||||||.||.||||||||||
RBAM_018900__ 243 GGAGTCAAAAGGAAGAGGAAATGATCCCATGCAGTCTTCAGAATCTCTGG 292
BSNT_03116___ 293 GGTTAAAACGCAATGAGATAACAGACCCTCAACTCAGTGTTAAACAAGGC 342
|.|||||.||.||||||||.|.|.||||||||..||||.|.|||||.||.
RBAM_018900__ 293 GTTTAAAGCGAAATGAGATTAAAAACCCTCAAACCAGTATCAAACAGGGA 342
BSNT_03116___ 343 ATCAAGCAATTTACCCTCATGTACAAGACCGGTAAGGAAAAAGGCGTGGA 392
|||||.|||||.||.|||||||||.|.||.||.|||.||||||||||.||
RBAM_018900__ 343 ATCAAACAATTCACTCTCATGTACCAAACAGGCAAGAAAAAAGGCGTAGA 392
BSNT_03116___ 393 TTTGGATACCATTATTCAAAGCTACAACATGGGGGCAGGTTACATTGATT 442
.||||||||.|||||.|||||||||||||||||.||.||.||.|||||||
RBAM_018900__ 393 CTTGGATACGATTATACAAAGCTACAACATGGGAGCCGGCTATATTGATT 442
BSNT_03116___ 443 TTGTAGCTGAACATGGAGGAACGCATACTGAGGAATTGGCAAAACAATAC 492
||||.|||||||||||||||.||||||||||||||.||||||||||||||
RBAM_018900__ 443 TTGTGGCTGAACATGGAGGATCGCATACTGAGGAACTGGCAAAACAATAC 492
BSNT_03116___ 493 TCCGAGCAGCAAGTCAAAAAAAATCCTGATCTGTATACTTGCGG-GGGAA 541
|||||||||||.||||||||.|||||..|.||.||.|||||||| |||||
RBAM_018900__ 493 TCCGAGCAGCAGGTCAAAAAGAATCCGAAACTTTACACTTGCGGAGGGAA 542
BSNT_03116___ 542 ATGCGAAA---AATTTCCGCTATCCGTATTGCTACGGTGATTATACGTAT 588
.||| ||||||||.|||||.||.|||||.||||||||.|||||.
RBAM_018900__ 543 ----CAAAGACAATTTCCGTTATCCCTACTGCTATGGTGATTACACGTAC 588
BSNT_03116___ 589 GCAGAAAAAGTAAAAGAAAAAACAAAAACTGTTGAAGAATCTTTGCAGGT 638
||||||||||||||||.||||||||||||.||||||.||||.||..|.||
RBAM_018900__ 589 GCAGAAAAAGTAAAAGCAAAAACAAAAACCGTTGAACAATCCTTAAATGT 638
BSNT_03116___ 639 TGCAACACTTGAAACCATGGAATCCAAGGCTCATGAATAA 678
..|||||||||||||..|.||| ||.|||
RBAM_018900__ 639 AACAACACTTGAAACGCTTGAA------------GAGTAA 666
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.