Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03114 and RBAM_018890

See Amino acid alignment / Visit BSNT_03114 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:58
# Commandline: needle
#    -asequence dna-align/BSNT_03114___yozA.1.9828.seq
#    -bsequence dna-align/RBAM_018890___yozA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03114___yozA-RBAM_018890___yozA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03114___yozA-RBAM_018890___yozA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03114___yozA
# 2: RBAM_018890___yozA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 335
# Identity:     259/335 (77.3%)
# Similarity:   259/335 (77.3%)
# Gaps:          13/335 ( 3.9%)
# Score: 998.5
# 
#
#=======================================

BSNT_03114___      1 ATGACTGAATTT--AGA-----GAAACGGAACAAT----CGGCTGCTGAT     39
                     ||||||||||||  .||     |||||  ||.|||    |.||||..|||
RBAM_018890__      1 ATGACTGAATTTCACGAATCCGGAAAC--AAAAATGACCCCGCTGTCGAT     48

BSNT_03114___     40 CTGGACGAGGAGACGCTGTTTCTAGTCGCGCAAACATTCAAAGCGCTTTC     89
                     .|.||.|||||.||..|.|||.|.||.||.||.||.||.||.|||.|.||
RBAM_018890__     49 TTAGATGAGGAAACTTTATTTTTGGTTGCCCAGACTTTTAAGGCGTTGTC     98

BSNT_03114___     90 TGATCCAACCCGAATCAGGATTCTCCATTTATTGTCCCAGGGAGAACATG    139
                     ||||||.|||.|||||||.|||||||||||..||||.|||||.||.||.|
RBAM_018890__     99 TGATCCGACCAGAATCAGAATTCTCCATTTGCTGTCACAGGGTGAGCACG    148

BSNT_03114___    140 CTGTAAACGGAATTGCAGAAAAGCTGAATTTACTGCAATCCACCGTGTCC    189
                     |.|||||.|..||.|||||||||||||||||.|||||.||.|||||.||.
RBAM_018890__    149 CGGTAAATGATATCGCAGAAAAGCTGAATTTGCTGCAGTCTACCGTTTCT    198

BSNT_03114___    190 CACCAGCTTAGATTTTTGAAAAATCTTCGGCTTGTCAAATCGCGCAGAGA    239
                     ||.|||||..|.|||.|.||||||||.||.||.||||||||.||||||||
RBAM_018890__    199 CATCAGCTGCGTTTTCTTAAAAATCTGCGCCTCGTCAAATCACGCAGAGA    248

BSNT_03114___    240 AGGAACATCGATTTATTACTCTCCGGAGGATGAACATGTTTTAGATGTTC    289
                     |||||||||.||.|||||.|||||.||||||||||||||.||||||||.|
RBAM_018890__    249 AGGAACATCCATCTATTATTCTCCTGAGGATGAACATGTGTTAGATGTGC    298

BSNT_03114___    290 TTCAGCAAATGATCCATCATACACAGCATGATTGA    324
                     |||||||||||||.||.|||||.|.|||.||||.|
RBAM_018890__    299 TTCAGCAAATGATTCACCATACGCGGCACGATTAA    333


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.