Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03111 and RBAM_018880
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:58
# Commandline: needle
# -asequence dna-align/BSNT_03111___yobW.1.9828.seq
# -bsequence dna-align/RBAM_018880___yobW.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03111___yobW-RBAM_018880___yobW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03111___yobW-RBAM_018880___yobW.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03111___yobW
# 2: RBAM_018880___yobW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 573
# Identity: 359/573 (62.7%)
# Similarity: 359/573 (62.7%)
# Gaps: 78/573 (13.6%)
# Score: 1107.5
#
#
#=======================================
BSNT_03111___ 1 ATGCATCTTACACTTCAGAGCGTTTATCCTGCCATGATCATCATCTTTTT 50
||||||.|.||||||||.|||.|.|..||||.|.|.||.||...||||||
RBAM_018880__ 1 ATGCATATCACACTTCAAAGCATCTGCCCTGTCTTAATGATTGCCTTTTT 50
BSNT_03111___ 51 TCTGTATAAAAAAATTAAAAGGTCCATCGGATACCAGCCGCTGAAGCCCC 100
|.||||||||||..|.|||.|||||.||||.|.||||||..||||.||||
RBAM_018880__ 51 TTTGTATAAAAAGGTGAAACGGTCCGTCGGCTTCCAGCCTTTGAAACCCC 100
BSNT_03111___ 101 GCTGGCTGTTCACCCGTATCATTCTTTTCTCGCTGTTTGCT--------- 141
|||||||.|..||..|.||.|||.|.||.|| .|||||
RBAM_018880__ 101 GCTGGCTTTATACAAGAATGATTTTGTTTTC----ATTGCTGGCCGCAGC 146
BSNT_03111___ 142 TTTGGCCTTTCAATCTTCAGCGCCATTCACCCTTTTTTATATGGATATCT 191
|.||||.||| ||||||..||..|||||...||||||.||..||||
RBAM_018880__ 147 TCTGGCGTTT-----TTCAGCATCACACACCCGGCTTTATACGGCCATCT 191
BSNT_03111___ 192 CATTTTGGGCATTCTTGGCGGATGGCTCCTTGTCTTTTTCGCTAAGAAAA 241
.||.||.||||.|.||.||||.|||||.||.|||.|.||.|||||....|
RBAM_018880__ 192 TATATTCGGCACTTTTTGCGGCTGGCTTCTGGTCCTGTTTGCTAAACGGA 241
BSNT_03111___ 242 ACATCTCCTTTGAAAAACGCAGAGGAAAGATCTATTTTCGGACTCATATT 291
||||.||.||||||.|||||.|.|||||.||.||||||||.|||||..|.
RBAM_018880__ 242 ACATTTCATTTGAAGAACGCCGCGGAAAAATGTATTTTCGCACTCACCTG 291
BSNT_03111___ 292 TGGGTAGAGGTGATTCTCTTAACTTTATTTCTATCAAGATTTCTGTATCG 341
|||.|.||..|.|||||.|||||.|||||.|||||.||||||.|.|||||
RBAM_018880__ 292 TGGATTGAACTTATTCTATTAACGTTATTCCTATCGAGATTTGTTTATCG 341
BSNT_03111___ 342 AGTGACGGAGCTTTATCTTACCTCACCTGATCTAAACAGC---CTT---- 384
.||.|..||..||| |||.|.|| ||||| |||
RBAM_018880__ 342 CGTTATTGAAATTT----------ACCGGGTC---ACAGCGGACTTTACC 378
BSNT_03111___ 385 -----GGA-TCATACAGTCAGTCAATCGGAACGGACCCTCTGACAATTGG 428
||| .|||||||.||..|..||||..|.||.||.|||||.||..|
RBAM_018880__ 379 CATCCGGAGGCATACAGCCAAACGGTCGGCGCCGATCCGCTGACCATCAG 428
BSNT_03111___ 429 CGTCTGTTTTCTGATAGCCGTTTATTATATCGGTTTTTCTTCTTTTGTCA 478
..|||.||.|.|.||.||.||.|||||.|.|||.||.||||.||.|||..
RBAM_018880__ 429 TATCTTTTATTTCATCGCAGTGTATTACAGCGGCTTCTCTTTTTATGTTT 478
BSNT_03111___ 479 TCAAGCTCAGCAGAAACGAACTCGAACAGCACGAATA-----CAATAAAG 523
|.||....||||||.||.|| ||.|||| ||.||
RBAM_018880__ 479 TAAAAACGAGCAGAGACCAA----------ACCAATAACAGTCAGTA--- 515
BSNT_03111___ 524 AAAAAGACATCCTTGCCCGCTAA 546
|.|||.|
RBAM_018880__ 516 ----------------CGGCTGA 522
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