Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03098 and RBAM_018830
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:58
# Commandline: needle
# -asequence dna-align/BSNT_03098___yobL.1.9828.seq
# -bsequence dna-align/RBAM_018830___yobL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03098___yobL-RBAM_018830___yobL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03098___yobL-RBAM_018830___yobL.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03098___yobL
# 2: RBAM_018830___yobL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1862
# Identity: 1352/1862 (72.6%)
# Similarity: 1352/1862 (72.6%)
# Gaps: 121/1862 ( 6.5%)
# Score: 4783.0
#
#
#=======================================
BSNT_03098___ 1 ATGAAGGTATTTGAGGCTGATTCATTACTTTTTG--------AAGCGGAT 42
||||||||||||||.||.|..||.||..|||..| ||||||..
RBAM_018830__ 1 ATGAAGGTATTTGAAGCAGCCTCGTTCATTTCAGCCGCAGAAAAGCGGGC 50
BSNT_03098___ 43 AAAAGAACCAA-------AGAGTATAAGGAACTAAGGTCGCAAATGGTGA 85
|||| ||| |||.||.| ||| |||.|..|.|
RBAM_018830__ 51 AAAA----CAATACGATCAGATTAGA--GAA---------CAATTTATCA 85
BSNT_03098___ 86 AGCTAAGAAAAGCTTTTCA---AAACGTAGCTAACCTAGATGACAGTGAG 132
|.||.||||||||.||||| || |.|||.|..||||||||||||||
RBAM_018830__ 86 ATCTCAGAAAAGCATTTCAGGGAA---TGGCTGATTTAGATGACAGTGAG 132
BSNT_03098___ 133 TTTTCAGGCAAGGGTGCTGACAACATTAAAGCATTTTATCATGATCATGT 182
|||||||||||.||.||.|||||||||||||||||.|.|||.|||||.|.
RBAM_018830__ 133 TTTTCAGGCAAAGGCGCCGACAACATTAAAGCATTCTTTCAAGATCACGC 182
BSNT_03098___ 183 CGGTGTTACTGATCA-ATGGATTGATTTAATTGACATGAAGATTGC-TTT 230
||||||.||.|| || .|||.||.||.|.||.||.|||||.||.|| |||
RBAM_018830__ 183 CGGTGTCACAGA-CAGCTGGCTTAATCTGATCGATATGAAAATCGCGTTT 231
BSNT_03098___ 231 CTTAAGCAGCATGTCTGCAAAA----CTTGAAGATGCTAAGA-TGTCTGA 275
||||| |||.||.||||.|||| || ||||| ..|| ||.|.||
RBAM_018830__ 232 CTTAA-CAGTATTTCTGGAAAAGTATCT----GATGC-CGGATTGGCCGA 275
BSNT_03098___ 276 TGCTTACATAGAAGAATCCTTTTTAGAACACGAGTTGGCTAACGCCTATA 325
|.|.|...|.|||||.||.|||||||||||||||.||.||.|.||..|.|
RBAM_018830__ 276 TTCGTTTGTGGAAGAGTCATTTTTAGAACACGAGCTGACTCATGCGAAGA 325
BSNT_03098___ 326 CAAAATCAAAATCCATTATGTCTGAACAGAAAAAAGCAATGAAAGACATA 375
..|.||||.||.||||.|||...||.|||...||.|.||||||||..||.
RBAM_018830__ 326 ATACATCACAAGCCATCATGCAGGAGCAGCGCAATGAAATGAAAGGTATC 375
BSNT_03098___ 376 TTAAACGACATCAATGATATTCTTCCCCTTGAAATATTTTCAACAGAAGA 425
.|..|.||.||||..|||||..|||..|||||..|.||.||.||||||||
RBAM_018830__ 376 CTTGATGAAATCAGCGATATCATTCATCTTGATGTTTTCTCGACAGAAGA 425
BSNT_03098___ 426 CTTCAAAGACAAACTTTCTTCTGCAGATGACAAACGTGAAAAAACAATCG 475
..||.|..|.||.|||...||.||||| |.||||||..|.||
RBAM_018830__ 426 TGTCGATCAAAAGCTTGAGTCAGCAGA---------TAAAAAAAGGAACG 466
BSNT_03098___ 476 ATA----AGCTAAAC-----AAGCTTGATGAGGATTTAAAAACAGAATAC 516
||| |..||||| |||||||||.|.|||.|||..|.|||||||
RBAM_018830__ 467 ATACCATACATAAACTCGGAAAGCTTGATCACGATCTAACGAAAGAATAC 516
BSNT_03098___ 517 GCTGAAACAGAGCCTAACGAACAATTCATTCAGCAAGATTTTAAAAAGCT 566
||.|||||.|||.|.||.|||||.|||||||||..|||||||.||.||||
RBAM_018830__ 517 GCAGAAACCGAGGCAAATGAACATTTCATTCAGGCAGATTTTCAACAGCT 566
BSNT_03098___ 567 GCAGGAATCAACAGGCAAAGGGAAGAACGCCACTCCGATTCACTATAACG 616
.||..|..|.||.||.||||||||.||||||||||||.||||||||||||
RBAM_018830__ 567 CCAAAACGCTACGGGAAAAGGGAAAAACGCCACTCCGCTTCACTATAACG 616
BSNT_03098___ 617 CCAAAGCGTATAGAGAAAGTGACATACATAAGAAAAAAGGCGACATAG-- 664
||||.||.||..|||||||.|||||.|||||||||||||.|||.||.|
RBAM_018830__ 617 CCAAGGCATACCGAGAAAGCGACATCCATAAGAAAAAAGACGAGATTGCA 666
BSNT_03098___ 665 AGAAGCATTCTGAAGCTTACTTAAGCG-TGAAGAAAGAAGAAGCAAAGGA 713
||| ||.||.||..|.||.|||| || |.||.||.||||||||.||.||
RBAM_018830__ 667 AGA--CACTCAGACACATATTTAA-CGTTTAAAAAGGAAGAAGCGAAAGA 713
BSNT_03098___ 714 CCGTGAAATCAAGGAATTAAAGAAAAAACTTAATGACGGTGTCTCTGACC 763
.||.|||||||||||..|.|||||||||||....||||||||..|.||.|
RBAM_018830__ 714 GCGGGAAATCAAGGATCTGAAGAAAAAACTCGCCGACGGTGTGACCGATC 763
BSNT_03098___ 764 CTGTTGAATATTTAGAGATTGCTAAGAAAGTAGGGTACGAGAATCTGGAG 813
|.|.||||||||||||.|||||.|||||..|.||.||.||.||.||.||.
RBAM_018830__ 764 CAGATGAATATTTAGAAATTGCGAAGAAGATCGGCTATGAAAACCTTGAA 813
BSNT_03098___ 814 CCAGCTCAAGTGCAGC----TTGCAGTGCAAATTGAACAAGCGAAGCAGC 859
||..|.|| ||||| |..|| |.||..||||||||||.||.||||
RBAM_018830__ 814 CCTTCCCA---GCAGCAATATGTCA-TTCAGCTTGAACAAGCAAAACAGC 859
BSNT_03098___ 860 TAGAAGGAGCAGGAGAAATCACCTGGGATATCGTAAAAGGTGTAGGAGTA 909
|.||||.|||.||||||.|.||.||||||||..|||||||.|..||.||.
RBAM_018830__ 860 TGGAAGAAGCCGGAGAAGTGACTTGGGATATATTAAAAGGAGCCGGCGTT 909
BSNT_03098___ 910 GGCTTATATGATGTTGGTAAAGACACTGTAACCGGCATATGGGATTTCAT 959
||.|||||||||||.||.||||||||.||.|.|||..|||||.|..|.||
RBAM_018830__ 910 GGTTTATATGATGTCGGGAAAGACACGGTTAGCGGGTTATGGCAACTAAT 959
BSNT_03098___ 960 CACCGATCCAGGAGAA-------ACACTATCAGCACT-GGGAAATGCAGT 1001
|||..|.||.|..||| |...||||| | ||| |||||
RBAM_018830__ 960 CACTAAACCTGATGAAGTTGTTGAAGGTATCA----TAGGG----GCAGT 1001
BSNT_03098___ 1002 TATTCATCCAGTGAAAACTTACGATGCCATTTCAGCAGCAATAGAAGAGT 1051
|..|||||||.|.||.||.||..|||||||||||.||||.||.||.||.|
RBAM_018830__ 1002 TGCTCATCCAATTAACACGTATAATGCCATTTCAACAGCTATTGAGGAAT 1051
BSNT_03098___ 1052 CATATCAAAAGGATATGGTGAATGGAGATGCCTATTCTAGATCAAGATGG 1101
|.||||||||.||||||||.|||||||||||.|||||.||||||||||||
RBAM_018830__ 1052 CGTATCAAAAAGATATGGTAAATGGAGATGCGTATTCCAGATCAAGATGG 1101
BSNT_03098___ 1102 GTAACGTATGCTGTTGGTTCAGTGGCTGTAGCTGTTTTTGGAACCAAAGG 1151
||.||.|||||.||.|||||||..|||||.|||||..|.|||||.|||||
RBAM_018830__ 1102 GTGACATATGCGGTCGGTTCAGCAGCTGTGGCTGTCGTCGGAACGAAAGG 1151
BSNT_03098___ 1152 TGCAGGAGCCATTAACAAAGCAGATGCAGCGGGCAAGGTCATAAACAAAG 1201
.|||||||||.||||||||||.|||||.|||||.||.|||||||||||.|
RBAM_018830__ 1152 CGCAGGAGCCGTTAACAAAGCTGATGCGGCGGGGAAAGTCATAAACAAGG 1201
BSNT_03098___ 1202 CAAGTCAGGCAGGGAAGAAAATTAAGGATGTCAAGATTCCAGATTTGCTG 1251
||.|.|||||||||||||||||||||||.||.||..|||||||..|.||.
RBAM_018830__ 1202 CAGGGCAGGCAGGGAAGAAAATTAAGGACGTTAAACTTCCAGAACTCCTT 1251
BSNT_03098___ 1252 CCTTATAATCCTAAGTACGACTTTCCTCTAGCCGATAATGTGCCATACAA 1301
||||||||..||||.||.||..||.||||..|.|.|.|.||.||||||||
RBAM_018830__ 1252 CCTTATAACTCTAAATATGATCTTGCTCTGTCGGGTGACGTACCATACAA 1301
BSNT_03098___ 1302 TGTGGTTGATAGCCAAAGCCTTAAGAATGAACTTTTGACTAATGCGAAGA 1351
|||||||||.|||||||.||||||.||||||||||||||.|||||.||||
RBAM_018830__ 1302 TGTGGTTGACAGCCAAAACCTTAAAAATGAACTTTTGACCAATGCAAAGA 1351
BSNT_03098___ 1352 AAATACCGGATGGAACAAGAAAACCGTTTACTGGCCAAAAGATAAGCCCC 1401
||||.|||||||||||.|||||.|||||||||||.|||.|.||||.||..
RBAM_018830__ 1352 AAATCCCGGATGGAACGAGAAAGCCGTTTACTGGTCAAGAAATAAACCTT 1401
BSNT_03098___ 1402 CCTTGGCTAAATAAAGAAAAGTATGATGCATATGAAATAGAGGGGAAGGT 1451
||||||.||||||||||||||||||.|||...|||||||||.||.||.||
RBAM_018830__ 1402 CCTTGGTTAAATAAAGAAAAGTATGGTGCTGTTGAAATAGACGGCAAAGT 1451
BSNT_03098___ 1452 AAAGGCGAAGGGGAAAGTTAAAGATGTAAGCCGAAGAGTGTATACTATGA 1501
|||.|..||.||..||.|||.||||||||||||.|||||.|||||..|.|
RBAM_018830__ 1452 AAAAGTTAAAGGACAAATTAGAGATGTAAGCCGTAGAGTCTATACCTTAA 1501
BSNT_03098___ 1502 AAGATATTGATATTAATCAAAAAA---CAGAATTCGGTGTTACAAATCTT 1548
|.||.||||||||||||||||||| ||.|| ||....||.||.||.
RBAM_018830__ 1502 AGGACATTGATATTAATCAAAAAACTCCAAAA---GGAAAAACCAACCTG 1548
BSNT_03098___ 1549 CAGCTAATGAAAAACGGGAATGCCCCTTATGCAGAAGATGGTACACAGAT 1598
.|..||||||||.|.||.||..|.||||||||..||||.||.||||||||
RBAM_018830__ 1549 GAATTAATGAAAGATGGTAAGTCTCCTTATGCTAAAGACGGAACACAGAT 1598
BSNT_03098___ 1599 TAATTTACATCACTTGATTCAAGAAGAACCTGGCCCAATGCTTGAAATCC 1648
|||.|||||||||.|.||.|||||||||..|||.||..|||||||.||.|
RBAM_018830__ 1599 TAACTTACATCACCTCATACAAGAAGAAAGTGGACCGTTGCTTGAGATAC 1648
BSNT_03098___ 1649 CTAACAGCTTACATACAAAATATAGTGATGTCATTCATCAGCTTAAGTCT 1698
||||.||.|||||||||||.|||||.||.||.||.|||...|||||...|
RBAM_018830__ 1649 CTAATAGTTTACATACAAAGTATAGCGACGTAATACATGGCCTTAAAGGT 1698
BSNT_03098___ 1699 GATGGTGAAAGTTTTAGAAATGATAAGGTTT-----TAAAAGCACAATAC 1743
.||||.|||||.||..|.|||||| |||| .|.|| |||.|||
RBAM_018830__ 1699 AATGGAGAAAGCTTCCGGAATGAT---GTTTACCTGGAGAA--ACAGTAC 1743
BSNT_03098___ 1744 GAGAGCTTT-AGAAAGAGATATTGGAAGTGGAGAGCGAAACAATTTGAGA 1792
||.|.|||| |||.| ||.|||||||||||||||||.|||||||.|||||
RBAM_018830__ 1744 GATAACTTTAAGACA-AGGTATTGGAAGTGGAGAGCAAAACAATATGAGA 1792
BSNT_03098___ 1793 ATGAGAATTGA- 1803
| ||||| |
RBAM_018830__ 1793 A--AGAAT--AA 1800
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