Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03079 and RBAM_018800

See Amino acid alignment / Visit BSNT_03079 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:57
# Commandline: needle
#    -asequence dna-align/BSNT_03079.1.9828.seq
#    -bsequence dna-align/RBAM_018800.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03079-RBAM_018800.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03079-RBAM_018800.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03079
# 2: RBAM_018800
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 636
# Identity:     377/636 (59.3%)
# Similarity:   377/636 (59.3%)
# Gaps:         129/636 (20.3%)
# Score: 1050.0
# 
#
#=======================================

BSNT_03079         1 ------------GTGGA-------TTATT--CTAAGGAACTGAAAGATTT     29
                                 .||||       |||||  ..|||||||||.|      
RBAM_018800        1 ATGGGAGATATTATGGATATTAATTTATTAATGAAGGAACTGCA------     44

BSNT_03079        30 ATTTTTAATGCAACAGTCTTATGCTACACTTTTTTCCACTTTAAACAAAA     79
                        |.|.||||||||...|||.||..||.|.|||||...|.|.||.|||.
RBAM_018800       45 ---TGTTATGCAACAAAGTTACGCATCATTATTTTCGGTTGTCAATAAAG     91

BSNT_03079        80 TTCAATCACGCGGAGACGATTA-TTATGAAAGCTTAACGTCGAGGCAATT    128
                     |.||..|.||.||.|||||.|| ||| ||||..||.||.||..|.||...
RBAM_018800       92 TGCAGGCTCGGGGGGACGAATACTTA-GAAATGTTGACTTCCCGACAGCA    140

BSNT_03079       129 TATGACGATGGTTGCCATACTG--CATTTACCGGAAGAGGAAACGACATT    176
                     .|||||..|..||||  ||.||  |||||||||...||.||.||.|||.|
RBAM_018800      141 CATGACTCTTATTGC--TATTGCCCATTTACCGACGGAAGATACCACACT    188

BSNT_03079       177 CAACAACATTGCAAAAAAATTAGGCACTTCAAAACAAAACATCAACAGAC    226
                     .|..||.||.||.|||||..|.|||||..|||||||||.|...||||.|.
RBAM_018800      189 TATGAATATCGCTAAAAAGCTGGGCACAACAAAACAAACCGCTAACAAAT    238

BSNT_03079       227 T--TGTCA------GCGGTATTGAAAAAAGAGGTTATG-TCATCACTGTA    267
                     |  |.|||      |||        ||||.|||.|||| ||| ||||||.
RBAM_018800      239 TAATTTCAAGCCTCGCG--------AAAAAAGGATATGTTCA-CACTGTG    279

BSNT_03079       268 CCAAGTAAACGCGACAAGCGTGCAGTTAATGTGAAGATTA---CTGATTC    314
                     |||||.||||..||.||.||||||.|.|||.|..||||||   ||||   
RBAM_018800      280 CCAAGCAAACTGGATAAACGTGCAATCAATATTGAGATTACCCCTGA---    326

BSNT_03079       315 AGG----AAAGCGTGTCATGGAGGAATGCGGT---GAAAAAGCGGTGTAT    357
                     |||    ||||||| |.||      .|.|.||   ||||||.|....|||
RBAM_018800      327 AGGAAAAAAAGCGT-TAAT------TTCCTGTTCAGAAAAATCCACCTAT    369

BSNT_03079       358 TTTATGGCCGATCTATTTAAAGGCTTTTCGACGGAAGAGCTGGAAACATT    407
                     |||.|.||.|||.|.|||.|.|.|||..|.||.||.||..|.||||||||
RBAM_018800      370 TTTTTAGCGGATATGTTTCATGACTTCACAACTGATGAAATTGAAACATT    419

BSNT_03079       408 GTGGATTTTATTGAAGAAACTGTACAGTTTTGATGGAGAAGAACAGGATG    457
                     .||||...|||||.|.|||||.||..||||||||||.|||||||||||||
RBAM_018800      420 CTGGAGGCTATTGCAAAAACTTTATCGTTTTGATGGTGAAGAACAGGATG    469

BSNT_03079       458 GTTTTGAAGAAGACGCTGCTGATTTTGACA-TTGAA----CAAAATCGAG    502
                     |||||||||||.|.||           ||| |||||    .||.||| ||
RBAM_018800      470 GTTTTGAAGAAAAAGC-----------ACATTTGAAAGTTGAAGATC-AG    507

BSNT_03079       503 --ACAATT---------------TGAAAACAAATTTATTGCAGGAATTCG    535
                       ||||||               ||||.|.|||.|.||.|| .|||||..
RBAM_018800      508 GCACAATTCATCTCAGATGACTATGAAGAAAAAATCATGGC-TGAATTTT    556

BSNT_03079       536 CAAAACGGAGA-------------------AAGTAA    552
                     ||||||||.||                   || |||
RBAM_018800      557 CAAAACGGCGATATGGGAGTGCAGACGATGAA-TAA    591


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.