Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03079 and RBAM_018800
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:57
# Commandline: needle
# -asequence dna-align/BSNT_03079.1.9828.seq
# -bsequence dna-align/RBAM_018800.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03079-RBAM_018800.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03079-RBAM_018800.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03079
# 2: RBAM_018800
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 636
# Identity: 377/636 (59.3%)
# Similarity: 377/636 (59.3%)
# Gaps: 129/636 (20.3%)
# Score: 1050.0
#
#
#=======================================
BSNT_03079 1 ------------GTGGA-------TTATT--CTAAGGAACTGAAAGATTT 29
.|||| ||||| ..|||||||||.|
RBAM_018800 1 ATGGGAGATATTATGGATATTAATTTATTAATGAAGGAACTGCA------ 44
BSNT_03079 30 ATTTTTAATGCAACAGTCTTATGCTACACTTTTTTCCACTTTAAACAAAA 79
|.|.||||||||...|||.||..||.|.|||||...|.|.||.|||.
RBAM_018800 45 ---TGTTATGCAACAAAGTTACGCATCATTATTTTCGGTTGTCAATAAAG 91
BSNT_03079 80 TTCAATCACGCGGAGACGATTA-TTATGAAAGCTTAACGTCGAGGCAATT 128
|.||..|.||.||.|||||.|| ||| ||||..||.||.||..|.||...
RBAM_018800 92 TGCAGGCTCGGGGGGACGAATACTTA-GAAATGTTGACTTCCCGACAGCA 140
BSNT_03079 129 TATGACGATGGTTGCCATACTG--CATTTACCGGAAGAGGAAACGACATT 176
.|||||..|..|||| ||.|| |||||||||...||.||.||.|||.|
RBAM_018800 141 CATGACTCTTATTGC--TATTGCCCATTTACCGACGGAAGATACCACACT 188
BSNT_03079 177 CAACAACATTGCAAAAAAATTAGGCACTTCAAAACAAAACATCAACAGAC 226
.|..||.||.||.|||||..|.|||||..|||||||||.|...||||.|.
RBAM_018800 189 TATGAATATCGCTAAAAAGCTGGGCACAACAAAACAAACCGCTAACAAAT 238
BSNT_03079 227 T--TGTCA------GCGGTATTGAAAAAAGAGGTTATG-TCATCACTGTA 267
| |.||| ||| ||||.|||.|||| ||| ||||||.
RBAM_018800 239 TAATTTCAAGCCTCGCG--------AAAAAAGGATATGTTCA-CACTGTG 279
BSNT_03079 268 CCAAGTAAACGCGACAAGCGTGCAGTTAATGTGAAGATTA---CTGATTC 314
|||||.||||..||.||.||||||.|.|||.|..|||||| ||||
RBAM_018800 280 CCAAGCAAACTGGATAAACGTGCAATCAATATTGAGATTACCCCTGA--- 326
BSNT_03079 315 AGG----AAAGCGTGTCATGGAGGAATGCGGT---GAAAAAGCGGTGTAT 357
||| ||||||| |.|| .|.|.|| ||||||.|....|||
RBAM_018800 327 AGGAAAAAAAGCGT-TAAT------TTCCTGTTCAGAAAAATCCACCTAT 369
BSNT_03079 358 TTTATGGCCGATCTATTTAAAGGCTTTTCGACGGAAGAGCTGGAAACATT 407
|||.|.||.|||.|.|||.|.|.|||..|.||.||.||..|.||||||||
RBAM_018800 370 TTTTTAGCGGATATGTTTCATGACTTCACAACTGATGAAATTGAAACATT 419
BSNT_03079 408 GTGGATTTTATTGAAGAAACTGTACAGTTTTGATGGAGAAGAACAGGATG 457
.||||...|||||.|.|||||.||..||||||||||.|||||||||||||
RBAM_018800 420 CTGGAGGCTATTGCAAAAACTTTATCGTTTTGATGGTGAAGAACAGGATG 469
BSNT_03079 458 GTTTTGAAGAAGACGCTGCTGATTTTGACA-TTGAA----CAAAATCGAG 502
|||||||||||.|.|| ||| ||||| .||.||| ||
RBAM_018800 470 GTTTTGAAGAAAAAGC-----------ACATTTGAAAGTTGAAGATC-AG 507
BSNT_03079 503 --ACAATT---------------TGAAAACAAATTTATTGCAGGAATTCG 535
|||||| ||||.|.|||.|.||.|| .|||||..
RBAM_018800 508 GCACAATTCATCTCAGATGACTATGAAGAAAAAATCATGGC-TGAATTTT 556
BSNT_03079 536 CAAAACGGAGA-------------------AAGTAA 552
||||||||.|| || |||
RBAM_018800 557 CAAAACGGCGATATGGGAGTGCAGACGATGAA-TAA 591
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