Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03068 and RBAM_018660
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:57
# Commandline: needle
# -asequence dna-align/BSNT_03068.1.9828.seq
# -bsequence dna-align/RBAM_018660___rtp.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03068-RBAM_018660___rtp.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03068-RBAM_018660___rtp.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03068
# 2: RBAM_018660___rtp
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 379
# Identity: 156/379 (41.2%)
# Similarity: 156/379 (41.2%)
# Gaps: 191/379 (50.4%)
# Score: 642.0
#
#
#=======================================
BSNT_03068 0 -------------------------------------------------- 0
RBAM_018660__ 1 GTGCACATATTGAAAGAAGAAAAAAGAAGTTCAACCGGTTTTTTAGTGAA 50
BSNT_03068 0 -------------------------------------------------- 0
RBAM_018660__ 51 ACAAAGAGCTTTTTTAAAGCTTTACATGATTACAATGACAGAGCAGGAAC 100
BSNT_03068 0 -------------------------------------------------- 0
RBAM_018660__ 101 GGCTTTACGGACTGAAGCTTCTCGAGGTGCTGCGTTCGGAATTTAAACCC 150
BSNT_03068 1 ----------------------------------------TTGCATGAGC 10
|| ||.||.|
RBAM_018660__ 151 ATCGGTTTTAAGCCGAATCATACCGAGGTGTACCGTTCACTT-CACGAAC 199
BSNT_03068 11 TTCTTGATGACGGGATACTAAAACAAATTAAAGTAAAAAAAGAAGGGGCT 60
|..|.|||||||||||..||||.|||.|.|||||.||||||||.||.||.
RBAM_018660__ 200 TATTGGATGACGGGATTTTAAAGCAAGTAAAAGTGAAAAAAGAGGGAGCC 249
BSNT_03068 61 AAGCTCCAGGAAGTCGTCCTCTATCAATTTAAAGATTACGAAGCTGCCAA 110
||.||||||||||||||.|||||||||||||||||.||.||||||||.||
RBAM_018660__ 250 AAACTCCAGGAAGTCGTTCTCTATCAATTTAAAGACTATGAAGCTGCGAA 299
BSNT_03068 111 GCTATATAAAAAACAGCTGAAGGTAGAGCTGGATCGCTGTAAAAAACTGA 160
|||.||.|||||||||||||||..||||||.||.|||||.|||||.||||
RBAM_018660__ 300 GCTTTACAAAAAACAGCTGAAGACAGAGCTTGACCGCTGCAAAAAGCTGA 349
BSNT_03068 161 TTGAAAAAGCTCTCTCAGATAATTTTTAA 189
|.||||||||..|.||||||||.||||||
RBAM_018660__ 350 TAGAAAAAGCCATTTCAGATAACTTTTAA 378
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