Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03058 and RBAM_018640
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:57
# Commandline: needle
# -asequence dna-align/BSNT_03058.1.9828.seq
# -bsequence dna-align/RBAM_018640___proJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03058-RBAM_018640___proJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03058-RBAM_018640___proJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03058
# 2: RBAM_018640___proJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1174
# Identity: 533/1174 (45.4%)
# Similarity: 533/1174 (45.4%)
# Gaps: 482/1174 (41.1%)
# Score: 1748.0
#
#
#=======================================
BSNT_03058 0 -------------------------------------------------- 0
RBAM_018640__ 1 GTGACGTCTCGGACGAAGATCAAAAGAGTCGCCGTGAAAATCGGCAGCAG 50
BSNT_03058 0 -------------------------------------------------- 0
RBAM_018640__ 51 CTCACTGACGAGCCTGCACGGGGAAATCAGCAGAAGAAAGCTGGAAGCAT 100
BSNT_03058 0 -------------------------------------------------- 0
RBAM_018640__ 101 TGGTGGATCAAATCGCACAGCTGAAAGACAGCGGCTATGAAGTGATTTTA 150
BSNT_03058 0 -------------------------------------------------- 0
RBAM_018640__ 151 GTATCTTCCGGCGCAGTGGCGGCAGGTTATCGGAAGCTCGGATTTATTCA 200
BSNT_03058 0 -------------------------------------------------- 0
RBAM_018640__ 201 GAAACCGGAAAGCCTCCCTGAAAAACAGGCTTCTGCTTCCATCGGGCAGG 250
BSNT_03058 0 -------------------------------------------------- 0
RBAM_018640__ 251 GATTATTAATGGAGGCTTATTCAAAGCTGTTTTTAGCGCACGGTTATGTC 300
BSNT_03058 0 -------------------------------------------------- 0
RBAM_018640__ 301 GCATCACAAATTTTAATTACAAGAAGCGACTTTTCCGATGAATACCGCTA 350
BSNT_03058 1 -------------------ATGAATGTACTGCTCGAGCGCGGCATCATCC 31
|||||.||.||..|.||.||.|||||.||.|
RBAM_018640__ 351 CCATAATGTGCGCAATACGATGAACGTCCTTTTGGAACGGGGCATTATTC 400
BSNT_03058 32 CGATCATAAACGAAAATGACACAGTTACCGTCAATCGGCTCAAGTTTGGC 81
||||.||.||.|||||||||||.||.||.|||||.|||||.|..||.||.
RBAM_018640__ 401 CGATTATTAATGAAAATGACACGGTCACAGTCAACCGGCTGAGATTCGGA 450
BSNT_03058 82 GACAATGATACACTCGCGGCAAAAGTCGCAGGATTGATTGATGCAGATAT 131
||.||.|||||||||||.||.||.||.|||||.||.||||||||.||.||
RBAM_018640__ 451 GATAACGATACACTCGCAGCGAAGGTGGCAGGTTTAATTGATGCCGACAT 500
BSNT_03058 132 GCTTGTGATTTTATCAGATATAGACGGATTATATGACGGCAATCCGCGCA 181
||||||||||||||||||.||.|||||.||||||||.|..||||||||||
RBAM_018640__ 501 GCTTGTGATTTTATCAGACATTGACGGTTTATATGATGATAATCCGCGCA 550
BSNT_03058 182 CAAATCCAGAAGCGAAAAGGATACAG-CGGGTGAGTGAAATAACACCTGA 230
..||.||..||||||||||.|| ||| |..||.|||||.||.||.||.||
RBAM_018640__ 551 GCAACCCGAAAGCGAAAAGAAT-CAGACATGTAAGTGACATCACTCCGGA 599
BSNT_03058 231 CATCGAAGCATGCGCAGGTGACACTGGAAGCATCGTTGGCACCGGCGGCA 280
.||.||||||.||||.||.||..|.||.||.....|.||.||||||||.|
RBAM_018640__ 600 AATAGAAGCAAGCGCGGGAGATGCCGGGAGTGAAATGGGAACCGGCGGAA 649
BSNT_03058 281 TGCGCTCTAAGCTTGATGCGTTTAAAATCGTAATGGCGTCTGGCATTAAA 330
||||.||.||.||.|||||.||||||||.||.|||||.||.||.||||||
RBAM_018640__ 650 TGCGTTCGAAACTGGATGCTTTTAAAATTGTGATGGCCTCCGGTATTAAA 699
BSNT_03058 331 GGTTTCCTTGGTCAGGC--AGATGCCGGCGATATTTTATATCACGCCGTT 378
||.||.||.||.||||| |.||.||| ||.|||.|...|||.||.||.
RBAM_018640__ 700 GGCTTTCTCGGGCAGGCTAACATTCCG--GACATTCTGCTTCAAGCGGTA 747
BSNT_03058 379 CATGAACAGGCGGAAGGCACCTATTTTGAAGCAGAAGGAACGCTTCCGTT 428
.||||...|||.|||||.||.|||||||||||.||||||||.||.|||||
RBAM_018640__ 748 GATGAGGCGGCTGAAGGAACTTATTTTGAAGCGGAAGGAACCCTGCCGTT 797
BSNT_03058 429 GAATCAAAAGGAGAAATGGATCGCTTTTAATTCCGGCCCGGAAGGTGAAA 478
.||.||.||.||..|||||.|.||.||||||||||||||.|||||.||||
RBAM_018640__ 798 AAACCACAAAGAACAATGGCTTGCATTTAATTCCGGCCCCGAAGGCGAAA 847
BSNT_03058 479 -TGTTTTTATCAGATGATTGTTCACGAAAAATAA---------------- 511
||| |||| ||||||.||
RBAM_018640__ 848 TTGT--------GATG---------GAAAAAGAAAGCAGCCGCGATGTCG 880
BSNT_03058 512 CAAACGGCCAATCGAGTTTATACCTGGACGGTGT---------AC----A 548
|.||||| || ||| |||| |.||| || |
RBAM_018640__ 881 CGAACGG--AA--------ATA--TGGA-GCTGTCACCGCAGGACATCGA 917
BSNT_03058 549 GAAGATTAAGGGGAAATTCAAAAGTGGTTCAGTTGTTCGGCTGATGGATT 598
|.||||||||||.|.|||||..||.||..|.|||||..|||||.|.|| |
RBAM_018640__ 918 GCAGATTAAGGGCAGATTCAGCAGCGGAGCGGTTGTCAGGCTGCTTGA-T 966
BSNT_03058 599 CAAAAGGGACGGAA---ATCGGCCTTGGAATCGTCAATTACTCTTCTGTA 645
||..||||| ||| .||||.||.||.||||||||.||.||.||.|..
RBAM_018640__ 967 CAGCAGGGA--GAAGAGCTCGGACTCGGCATCGTCAACTATTCCTCAGCC 1014
BSNT_03058 646 CAGCTTCAAGAACCGGA-----AAAGAA---------AAAGGAACTGA-C 680
||||| ||| || |||||| |||...||.|| |
RBAM_018640__ 1015 CAGCT----GAA---GACTTTTAAAGAAACGCCGCCCAAACAGACCGATC 1057
BSNT_03058 681 AAACAGAGCTCTAATTGATCAAGAAGCATTTGTTTGCCATGTGGATTTTT 730
||.||| |.|||||||..|||||.|||||.|||||.||.||..|.|
RBAM_018640__ 1058 AATCAG-----TCATTGATCCGGAAGCGTTTGTCTGCCACGTTGAACTAT 1102
BSNT_03058 731 CTTTAC-------CTGTAAATTAA 747
|..|.| |||.
RBAM_018640__ 1103 CCATTCCGATCGGCTGA------- 1119
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