Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03052 and RBAM_018590
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:55
# Commandline: needle
# -asequence dna-align/BSNT_03052___yogA.1.9828.seq
# -bsequence dna-align/RBAM_018590___yogA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03052___yogA-RBAM_018590___yogA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03052___yogA-RBAM_018590___yogA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03052___yogA
# 2: RBAM_018590___yogA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1055
# Identity: 684/1055 (64.8%)
# Similarity: 684/1055 (64.8%)
# Gaps: 136/1055 (12.9%)
# Score: 2081.0
#
#
#=======================================
BSNT_03052___ 1 ---ATGAAAGC---TGTAATTCACAACGGAAAAGCCGGTCTTCTGGGGTT 44
|||||.|| |.|.||.||| ||||| |||..||
RBAM_018590__ 1 ATGATGAATGCCCTTATCATACAC----GAAAA----------TGGCTTT 36
BSNT_03052___ 45 -ATCAGTTCAGG-----ACGTTCCATCAACAAA--GCCTGGATACGGAGA 86
|| |||||| ||.| .||||| |||.|||.||||.||
RBAM_018590__ 37 GAT---TTCAGGCAGGCACCT------GACAAAAGGCCGGGAAACGGCGA 77
BSNT_03052___ 87 GGTAAAGGTTAAATTAAAATCTGCAGGCCTGAATCATCGTGACTTGTTTC 136
.|||||..|.||..|.|||.|.||.||..|.||.||||||||.||||||.
RBAM_018590__ 78 AGTAAAAATAAAGCTGAAAACAGCCGGATTAAACCATCGTGATTTGTTTT 127
BSNT_03052___ 137 TTATGAAAAAC----AAATCTGAACAAGATCCTCA-CATGA---TA--CT 176
|.||||||||| |||.|.||| | ||||| || ||
RBAM_018590__ 128 TAATGAAAAACCACGAAACCGGAA----------ACCATGAATTTACTCT 167
BSNT_03052___ 177 GGGTTCTGACGGCGCGGGTATC---ATCGAAGAGATTGGTGAAGGCGT-- 221
.|||||.|||||||||||.||| |.|||| ||.||..|.|||||
RBAM_018590__ 168 CGGTTCAGACGGCGCGGGAATCGTAACCGAA---ATAGGACACGGCGTCC 214
BSNT_03052___ 222 -GAAAAATGTTACTGTTCAGACAGAAGTAGTCATTTTCCCGACATTGAAC 270
|....|| |||||| ||..|||||||..||||...||||....||||.
RBAM_018590__ 215 GGTCTCAT-TTACTG--CATGCAGAAGTCATCATCAACCCGGTGCTGAAT 261
BSNT_03052___ 271 TGGGATTTGAC---AGAAAATGTTCCACCTGTACCTGAGATTCTGGGAGG 317
|||.| ||| .||..|.||.||..|.||.|||||.|||.|.||.||
RBAM_018590__ 262 TGGAA---GACTGTTGAGGACGTACCGGCCGTCCCTGACATTTTAGGCGG 308
BSNT_03052___ 318 TCCTTCGGACGGAACACTTGCTGAATATGTGATCATTCCTTCACAAAATG 367
|||....|||||||||.||.|....|||||.|||.|||||....||||||
RBAM_018590__ 309 TCCGAGCGACGGAACATTTTCACCTTATGTCATCGTTCCTGAGGAAAATG 358
BSNT_03052___ 368 C--------AATCAAAAAACCTGCTTATTTATCTTGGGAAGAAGCGGGCG 409
| ||.|..||.||||| .|||||||.||||||||||
RBAM_018590__ 359 CCGTTTTAAAACCCGAACACCTG--------ACTTGGGAGGAAGCGGGCG 400
BSNT_03052___ 410 TTTTACCTTTATCCGCTTTAACCGCATATCGGGCCTTGTTTACAAAGGGG 459
|..|.||.|||||.||.||||||||.|||||.|||||.||||||||.||.
RBAM_018590__ 401 TGCTGCCGTTATCAGCATTAACCGCTTATCGCGCCTTATTTACAAAAGGA 450
BSNT_03052___ 460 CAATTAAAAAAAGGCGAGCATCTATTGATACCCGGCATCGGCAGCGGTGT 509
|||||||||||||||||.|||||..|..|.||.||||||||.|||||.||
RBAM_018590__ 451 CAATTAAAAAAAGGCGAACATCTTATCCTTCCGGGCATCGGAAGCGGCGT 500
BSNT_03052___ 510 AGCAACCTACGCTTTATTTATGGCTAAGGCGATTGGGGCAACAGTAAGCG 559
.|||||.|||||.|||||.|||||.||.||.||.||.||.|||||.||||
RBAM_018590__ 501 GGCAACATACGCCTTATTAATGGCAAAAGCTATCGGAGCGACAGTCAGCG 550
BSNT_03052___ 560 TGACCTCCCGCAGTGAGGAGAAAAGAAAAAAGGCGCTGAAATTAGGTGCT 609
|.||||||||||||||..|.||||.|.|||..||.|||..||..|||||.
RBAM_018590__ 551 TCACCTCCCGCAGTGAAAACAAAAAACAAACCGCACTGTCATACGGTGCA 600
BSNT_03052___ 610 GATTACGCATTTGACAGCTACAGCAATTGGGATGAGCAGTTGCAGGGAAA 659
||....||..|||||||||||.|..|.|||.|||||..|.||.|.||..|
RBAM_018590__ 601 GACCGGGCGATTGACAGCTACGGTGACTGGAATGAGGCGCTGAATGGCGA 650
BSNT_03052___ 660 AAAGGCGGATGTTGTTCTTGACAGCATAGGACCTGCCCTCTTTTCGGAAT 709
|||.||.|||.|..|.||||||.|..||||.||.|||.|.||| .||.
RBAM_018590__ 651 AAAAGCAGATATCATACTTGACGGTGTAGGCCCCGCCTTATTT---CAAC 697
BSNT_03052___ 710 ACTTCC--GCCATGTA--AAACCAAATGGCCGTATTGTCAGCTTTGGGGC 755
|||..| |.||| || |||||.||||||||.||.||.|..||.||.||
RBAM_018590__ 698 ACTATCTTGACAT-TATGAAACCGAATGGCCGGATCGTAACATTCGGCGC 746
BSNT_03052___ 756 AAGCTCAGGGGATAATCTCAGTTTTCCGGTGCGTTCTCTATTCTTTCCTC 805
.||.|||||.|||.|.|||.|.|||||..|.||.||.||.||.|||||.|
RBAM_018590__ 747 CAGTTCAGGCGATCAGCTCGGATTTCCTATTCGCTCGCTGTTTTTTCCGC 796
BSNT_03052___ 806 AGGTCAATGTTTTGGGAACCTCGATGGGAAGCGGTGAGGAATTTCAAGCT 855
||.|..||.||.|.||.||.||.|||||||||..||||||||||...|.|
RBAM_018590__ 797 AGATTCATATTCTCGGTACATCAATGGGAAGCAATGAGGAATTTGCGGAT 846
BSNT_03052___ 856 ATGCTCGCTTTCATTGACAAACATAAGCTGCGG-------CCTGTAATTG 898
|||||.| .||||..|||| .||||||| ||..|.||.|
RBAM_018590__ 847 ATGCTGG----AATTGGTAAAC---CGCTGCGGCATCCGTCCCATTATCG 889
BSNT_03052___ 899 ACCGGATATATCCTTTAGAAAAAGCATGTGAAGCA---------TATAAA 939
||||.||.||.|||.| || |||||||| |.|||.
RBAM_018590__ 890 ACCGCATGTACCCTCT--------CA-GTGAAGCAGCTGCCGCTTTTAAC 930
BSNT_03052___ 940 AGAATGCAGGAAGGCAGACAGTTTGGAAACATCGG-GATCGTAATGGA-- 986
|||||||.||||||..|.|||||.||.||.||||| ..|||| .||||
RBAM_018590__ 931 AGAATGCGGGAAGGACGGCAGTTCGGCAATATCGGCTTTCGT-TTGGATG 979
BSNT_03052___ 987 -ATAA 990
.|||
RBAM_018590__ 980 TCTAA 984
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