Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03042 and RBAM_018500

See Amino acid alignment / Visit BSNT_03042 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:54
# Commandline: needle
#    -asequence dna-align/BSNT_03042___yoeB.1.9828.seq
#    -bsequence dna-align/RBAM_018500___yoeB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03042___yoeB-RBAM_018500___yoeB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03042___yoeB-RBAM_018500___yoeB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03042___yoeB
# 2: RBAM_018500___yoeB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 572
# Identity:     405/572 (70.8%)
# Similarity:   405/572 (70.8%)
# Gaps:          55/572 ( 9.6%)
# Score: 1397.5
# 
#
#=======================================

BSNT_03042___      1 ATGAAAAAATGTCTTCTATTTCTAACAACCATTGCACTTATTCTGTCATT     50
                     |||||||||||.||..||||.||.||.||.|||.||.|.|||||||||||
RBAM_018500__      1 ATGAAAAAATGGCTATTATTCCTCACTACTATTACATTGATTCTGTCATT     50

BSNT_03042___     51 AAGCACAAATGC----ATTTGCGAAAAATACATC---AGGCGATTTATCA     93
                     ..||||   |||    | .|||.||||||.||.|   .|||  .||| ||
RBAM_018500__     51 GGGCAC---TGCGGCGA-CTGCAAAAAATGCACCTAATGGC--CTTA-CA     93

BSNT_03042___     94 CAAAAACAAGCATTACAGTTGGCATTATCCGCTAGAGAACATTTTTGGAA    143
                     ||||||||||||.|.|||.||||..|.||.||.|||||||||||.|||||
RBAM_018500__     94 CAAAAACAAGCACTTCAGCTGGCCCTGTCAGCGAGAGAACATTTCTGGAA    143

BSNT_03042___    144 CACCATGAGCGGCCACAATCCGAAGGTG------AA--AAAAGCAGTTTG    185
                     .||.|||||||||           ||||      ||  |||.|||..|||
RBAM_018500__    144 TACAATGAGCGGC-----------GGTGCGCTTAAATCAAACGCAAATTG    182

BSNT_03042___    186 CCCATCAGGCACATTCGAGTATCAAAATCTTCAATATGTATACATGTGCA    235
                     |.||||.|...|.||.||.|||||||||||.||||||||||..|||||||
RBAM_018500__    183 CACATCTGAACCGTTTGAATATCAAAATCTGCAATATGTATTTATGTGCA    232

BSNT_03042___    236 GTGATCTAGGCACTAAAGCAAAAGCGGTGAATTATTTAACTCCTATTTTT    285
                     ..||.||.||.||.|||||.|||||.||.||.|||.|.||.||...||||
RBAM_018500__    233 AAGACCTCGGAACAAAAGCGAAAGCCGTAAAATATCTGACACCCGCTTTT    282

BSNT_03042___    286 ACAAAAACAGCAATCGAAAAAGGCTTTAAAGATTATCATTTCACTGTTTC    335
                     |||||...|||.||.||.|||||..|.||||||||.||.||||||||   
RBAM_018500__    283 ACAAAGCAAGCGATTGACAAAGGGCTCAAAGATTACCACTTCACTGT---    329

BSNT_03042___    336 AAAA---GGAAAGCTTGCTGTTCCAATCGGTGACGGAGACAATCTTTTGA    382
                     ||||   ||.||..|.||||||||..||||.||||||||.||.||..|||
RBAM_018500__    330 AAAAGACGGCAAATTGGCTGTTCCGGTCGGCGACGGAGATAACCTCCTGA    379

BSNT_03042___    383 ATTGGAAAAAATCAACTGCTAAA-----CTGGTCTCTAAAAAAG---GCG    424
                     |||||||||||.|||     |||     ||..|.||||||||||   |||
RBAM_018500__    380 ATTGGAAAAAAGCAA-----AAATGACCCTTCTTTCTAAAAAAGGAAGCG    424

BSNT_03042___    425 GCACAATCACATACGAATTTACCGTCCCTACATTAGACGGATCCCCTTCT    474
                     .| |||  ||||||...||.||.||.||.||..|.|||||.||.||.||.
RBAM_018500__    425 TC-CAA--ACATACCGCTTCACTGTACCGACTCTTGACGGTTCTCCGTCA    471

BSNT_03042___    475 GCAAAACGGAAAGTGACATTCGTGAAAGAAAATAAAAAATGGAAAGTCAA    524
                     ||||||||.||.||.||||||||.||||||||.||....|||||||||||
RBAM_018500__    472 GCAAAACGCAATGTAACATTCGTAAAAGAAAACAACGTTTGGAAAGTCAA    521

BSNT_03042___    525 TCAATTTGACGCAGTTATATAA    546
                     |||||||||.||.||.||||||
RBAM_018500__    522 TCAATTTGATGCTGTCATATAA    543


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