Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03039 and RBAM_018480
See
Amino acid alignment /
Visit
BSNT_03039 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:54
# Commandline: needle
# -asequence dna-align/BSNT_03039___yoxA.1.9828.seq
# -bsequence dna-align/RBAM_018480___yoxA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03039___yoxA-RBAM_018480___yoxA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03039___yoxA-RBAM_018480___yoxA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03039___yoxA
# 2: RBAM_018480___yoxA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1022
# Identity: 673/1022 (65.9%)
# Similarity: 673/1022 (65.9%)
# Gaps: 97/1022 ( 9.5%)
# Score: 1966.5
#
#
#=======================================
BSNT_03039___ 1 ATGGCAAACTTTATTGAAAAAATGACTTATTTGGGAACACCGGCCATCAA 50
|||.| .||||||.|.|.|||||||||.||.....|.|||||.||
RBAM_018480__ 1 ATGAC------GATTGAACATACGACTTATTTAGGGGTTTCAGCCATAAA 44
BSNT_03039___ 51 AGCGGGCAACGAACA-TCTAGAAATG-ATTGTTGTCCCTGAGTGGGGGAG 98
|||||..|..||.|| .|| .|||| ||..||||.||.|||| |||||.
RBAM_018480__ 45 AGCGGAGACTGATCAGGCT--GAATGCATCATTGTGCCGGAGT-GGGGAT 91
BSNT_03039___ 99 C-AACGTCATTTCTC-TCGTGGACAAAACAACAAATGTCCAGCTTTTGCG 146
| ||.|||||.||.| ||| |||.||||.|||...|.|.|.||||.||.|
RBAM_018480__ 92 CAAATGTCATATCGCTTCG-GGATAAAAGAACCGGTATGCGGCTTCTGAG 140
BSNT_03039___ 147 TGAACCGGAAACAGC--AGAAAGTTTTCACGACACACCAACATTGTATGG 194
.|||||||||||.|| ||.|| ||.|.||..|.|||.|...||||.||
RBAM_018480__ 141 AGAACCGGAAACTGCGGAGCAA--TTCCGCGCAAAACCGATGCTGTACGG 188
BSNT_03039___ 195 CATTCCAATCCTGTTCCCGCCTAACCGCATAAGTGACGGTACATTCAGTT 244
||||||..|..|.||||||||.|||||.||.|..|||||.||.||..|||
RBAM_018480__ 189 CATTCCCGTTTTATTCCCGCCGAACCGGATTACGGACGGGACGTTTCGTT 238
BSNT_03039___ 245 TCCGGGGCAGAACGTATCATTTTGATATCAACGAGAAGGATAAACACAAC 294
|....|||.|..|||||||.|||||.||.|||||..||||||||||.||.
RBAM_018480__ 239 TTGACGGCCGCGCGTATCAATTTGAGATAAACGAAGAGGATAAACATAAT 288
BSNT_03039___ 295 CATCTTCACGGGTTTCTTTACCATGAAAAGTGGAATGTCGTGACCACGAA 344
|||.|||||||.||||||.|..||.|..|.|||||.|..|.| |.|
RBAM_018480__ 289 CATATTCACGGCTTTCTTCATAATCAGCATTGGAAAGCGGCG-----GCA 333
BSNT_03039___ 345 GC-AAACTGATGAAGA---------AGTGATTGTTGAAACAGAAATTGAT 384
|| ||| ||||| |.|||..||.|||||||||||||||
RBAM_018480__ 334 GCGAAA-----GAAGAGGGGGATGGAATGACAGTCGAAACAGAAATTGAT 378
BSNT_03039___ 385 CTTTCTGAGCTTCCCCATGTGCAGAAGCAATTTCCTCATCATGCCGTCGT 434
|||||..||.||||||.|||.||.||.||||||||.||..|||.|||.||
RBAM_018480__ 379 CTTTCAAAGATTCCCCGTGTTCATAAACAATTTCCGCACGATGTCGTTGT 428
BSNT_03039___ 435 TCGGATGACATACACAATCAAGGAGAATACCCTATTTA---AACATGCGA 481
.||||||||.||.|||.|.||.||.||| .|.|||| |.|..|||.
RBAM_018480__ 429 CCGGATGACCTATACATTAAAAGACAAT---GTGTTTACGCAGCGGGCGC 475
BSNT_03039___ 482 CGGTCATGAACAAAGGAAAGGAAGCGTTTCCTTGGGGAATTGGTTATCAT 531
.|.|.||.|||||.||||.|||.||.|||||||||||..|.||.||||||
RBAM_018480__ 476 TGATTATCAACAAGGGAACGGAGGCTTTTCCTTGGGGGCTCGGCTATCAT 525
BSNT_03039___ 532 ACTACATTTATATTTCCGGCA--GAA-----AGCTCGT-TATTCTCCCTG 573
.|.||.|||.|.|| || ||| |.|.||| ||||.| ||
RBAM_018480__ 526 TCAACTTTTGTTTT-----CAATGAAGAGCGATCCCGTCTATTTT---TG 567
BSNT_03039___ 574 ACAGCAGATCAGCA-ATGGGAGTTGGATGAACGCCTGCTGCCGACCGGGA 622
||.||.|| |.||| .|||||.||..|||||||..|..|||||||.||
RBAM_018480__ 568 ACGGCTGA-CCGCATGTGGGAATTAAATGAACGTTTCGTGCCGACGGG-- 614
BSNT_03039___ 623 AAC----TGATGGGTGTACCGAATAAAGAAGCTTTGCATGAAGGAATGGA 668
| |..|||.|||.||..||||||||||.||.|.|.|.||.|||..
RBAM_018480__ 615 --CCGTTTATTGGATGTTCCTGATAAAGAAGCGTTCCGTCATGGGATGTC 662
BSNT_03039___ 669 TTTGCGCCACAAGCAGCTGGATGATGTCTTTTTATCTTCTTATCAGA-AG 717
||||....|.||.|||.|.||.|||||.|||.|.||||| |.|| .|
RBAM_018480__ 663 TTTGAAAAATAAACAGTTTGACGATGTTTTTCTTTCTTC----CGGACGG 708
BSNT_03039___ 718 AGGGGCGGAGAAAACCAGGCAGTCATTTATCATCAGCAT--GCACATATC 765
|..|||||..|.||..|.||.||.||||||||||.|.|| |||..||||
RBAM_018480__ 709 AATGGCGGCAATAATGAAGCTGTTATTTATCATCCGGATGAGCAATTATC 758
BSNT_03039___ 766 AGCATTATTTATAAGGCAGATGAACA----GTTTAAACATTGGGTTGTAT 811
|.||.|.|||.|||||| ||| .||.||.||||||||.||||
RBAM_018480__ 759 --CGTTTTGTATCAGGCAG----ACACGTCTTTCAAGCATTGGGTGGTAT 802
BSNT_03039___ 812 ACAATGCGGACGGAAAACAAGGGTATTTATGCCCTGAACCTTACACATGG 861
|.||.|..||||||||.||.||||.|.|..|.|.|||.|||||.||.|..
RBAM_018480__ 803 ATAACGGTGACGGAAAGCAGGGGTTTGTCAGTCTTGAGCCTTATACTTCC 852
BSNT_03039___ 862 GTGACAAACGCAGTGAATCTTGATTTA-CCTTCGTCACTCACTGGTTTTC 910
||.|||.|.|||.|.|||| |||.|.| |||.|.|||||.||.||..|||
RBAM_018480__ 853 GTTACAGATGCATTTAATC-TGAATCAGCCTGCATCACTGACAGGGCTTC 901
BSNT_03039___ 911 AAGTGCTGGAGCCGGGAGAAGAAACGACAGCTAAAAGCAGTATCACCATT 960
|..|.|||.|.|||||.||||||.||.|.||...|..|||.|||||||||
RBAM_018480__ 902 AGATTCTGAAACCGGGCGAAGAAGCGGCTGCGTCATCCAGGATCACCATT 951
BSNT_03039___ 961 GAACTGAATCATC----AATAG 978
.||.||.| | |||||
RBAM_018480__ 952 ---TTGCATGA-CGAAGAATAG 969
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.