Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03024 and RBAM_018400
See
Amino acid alignment /
Visit
BSNT_03024 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:54
# Commandline: needle
# -asequence dna-align/BSNT_03024___yngK.1.9828.seq
# -bsequence dna-align/RBAM_018400___yngK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03024___yngK-RBAM_018400___yngK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03024___yngK-RBAM_018400___yngK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03024___yngK
# 2: RBAM_018400___yngK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1620
# Identity: 1113/1620 (68.7%)
# Similarity: 1113/1620 (68.7%)
# Gaps: 168/1620 (10.4%)
# Score: 3622.5
#
#
#=======================================
BSNT_03024___ 1 ---------------------ATG--AAGGTTTGCCAAAAGTCGATTGTC 27
||| |.||||| |||.|
RBAM_018400__ 1 ATGAAAAGCTGCCGTTTTAGCATGATATGGTTT------------TTGGC 38
BSNT_03024___ 28 CGTT-TCCTTGTCAGCTTGATCATCGGAACGTTTGTCATT-TCCG-TTCC 74
|||| |.| ||.||||..| |||| ||..|||| ||.| .|||
RBAM_018400__ 39 CGTTGTAC-TGACAGCCGG--CATC-------TTTACATTCTCAGCATCC 78
BSNT_03024___ 75 GTTTATGGCCAATGCG-----CAGTCTGACAGGGAGCTGAGAGCCGTATG 119
|...|.| ||| ||| |||.|..|.||.||..|||||||||||||
RBAM_018400__ 79 GCACAAG--CAA-GCGGCACTCAGCCGAAGAGAGAAATGAGAGCCGTATG 125
BSNT_03024___ 120 GATTGCTTCCGTATTAAATATTGATTGGCCGTCGAAAAAAGGGTTATCTG 169
|||.||.||.||....|||||.||.|||||.||.||||||||| |||
RBAM_018400__ 126 GATCGCGTCTGTCACCAATATCGACTGGCCCTCTAAAAAAGGG----CTG 171
BSNT_03024___ 170 T----GAAAGAGCAAAAACAG-GAGTATATCAAACTGCTGGACGATGTGC 214
| |.||||||||||| || ||.||.|.|||.||||||||.||.||.|
RBAM_018400__ 172 TCACCGGAAGAGCAAAAA-AGAGAATACAGCAAGCTGCTGGATGACGTTC 220
BSNT_03024___ 215 AAAAAATGGGAATGAATGCCGTTATCGTTCAGATTAAACCGACGGCTGAT 264
|..|.|||||||||||.|||||||||||.||.|||||.||..||||||||
RBAM_018400__ 221 AGGAGATGGGAATGAACGCCGTTATCGTCCAAATTAAGCCTGCGGCTGAT 270
BSNT_03024___ 265 GCCTTTTATCCGTCAGCTTACGGGCCTTGGTCGGAATACTTAACCGGTGT 314
||.||||||||.||||.|||||||||||||||.||.||..|.||.||...
RBAM_018400__ 271 GCTTTTTATCCATCAGATTACGGGCCTTGGTCAGAGTATCTGACAGGAAC 320
BSNT_03024___ 315 CCAAGGGAAGGACCCGGGCTATGATCCTCTTGCATTTATGATTGAAGAAA 364
.|||||.||..|.||.|||||.|||||.|||||.|||.|..|||||||.|
RBAM_018400__ 321 ACAAGGCAAAAATCCCGGCTACGATCCGCTTGCTTTTTTAGTTGAAGAGA 370
BSNT_03024___ 365 CCCATAAACGAAATTTGGAATTTCATGCGTGGTTTAACCCTTACCGTATT 414
|.||||||||.|||.|.||||||||.||.|||||.||.||||||||.||.
RBAM_018400__ 371 CACATAAACGGAATCTTGAATTTCACGCTTGGTTCAATCCTTACCGGATC 420
BSNT_03024___ 415 ACAATGAATCATACAGATCTTAATAAATTGTCTGA-GAGTCACCCGGCAA 463
||.||||||||.|||.||.|.|||....|.||.|| || |||.||.||..
RBAM_018400__ 421 ACGATGAATCACACAAATTTGAATGCGCTTTCAGATGA-TCATCCCGCGC 469
BSNT_03024___ 464 GAAAACATCCAGATTGGGTTGCCGCCTATGGAAACCAGCTGTATTATCAT 513
|....|||||.||.|||||.||.||.||.|||||.||||||||.|||.||
RBAM_018400__ 470 GTTCGCATCCGGACTGGGTCGCTGCATACGGAAAACAGCTGTACTATAAT 519
BSNT_03024___ 514 CCAGGCATTCCAGAAACGAGAGATTTTAT--CGTCAAAGGCATTGAAGAA 561
||.||||||||.|||...|||.|.||||| || .|.||.||..||||.
RBAM_018400__ 520 CCGGGCATTCCGGAAGTAAGACAATTTATAACG--GATGGAATCAAAGAG 567
BSNT_03024___ 562 GTCGTAAAACATTATGATATCGATGCTGTTCATATGGATGATTATTTTTA 611
||.||.|..|.||||||.||.|||||.|||||||||||||||||||||||
RBAM_018400__ 568 GTGGTCAGCCGTTATGACATTGATGCGGTTCATATGGATGATTATTTTTA 617
BSNT_03024___ 612 CCCTTATAAAATAGCAGGACAGGAATTTCCTGATCAAGCACAGTATGAAC 661
.|||||||||||.||.|||||||||||.||.|||||.||..|.||.||||
RBAM_018400__ 618 TCCTTATAAAATTGCCGGACAGGAATTCCCCGATCAGGCGGAATACGAAC 667
BSNT_03024___ 662 AATACGGAAAAGGCGCT---TTTTCTAAT--ATCGATGACTGGCGGCGGG 706
..||||||||| ||| |||.| || ||.|||||||||||..|||
RBAM_018400__ 668 GGTACGGAAAA---GCTCACTTTGC--ATCAATTGATGACTGGCGCAGGG 712
BSNT_03024___ 707 ACAATGTGAACCAGCTTGTCAAACAAATCAACCAAACAATTAAAGCTGAA 756
|.||.||.||||.||||||.|||.|||||||||||||.||.|||...|||
RBAM_018400__ 713 ATAACGTCAACCGGCTTGTAAAAGAAATCAACCAAACCATCAAACGAGAA 762
BSNT_03024___ 757 AAACCGTATGTCAAATTCGGCATCAGTCCCTTTGGAGTATGGAGAAACGC 806
|||||.||||||||||||||.|||||.||.||.||.|||||||||||.||
RBAM_018400__ 763 AAACCTTATGTCAAATTCGGAATCAGCCCGTTCGGCGTATGGAGAAATGC 812
BSNT_03024___ 807 CGCAGATGACCCGACCGGATCGAATACAAAA-----GCAGGCGTCAGAAA 851
|||||||||||||||.||.|| |.||| |||||.||..|.||
RBAM_018400__ 813 CGCAGATGACCCGACAGGCTC-----CGAAACGGCCGCAGGGGTGCGGAA 857
BSNT_03024___ 852 TTATGATGATCTATATGCAGACACAAGACATTGGATCCAAGAAGGCGACA 901
.|||||||||.|||||||.||.||.|||.|.|||||||||.||||..|||
RBAM_018400__ 858 CTATGATGATTTATATGCTGATACGAGAGAATGGATCCAAAAAGGATACA 907
BSNT_03024___ 902 TCGATTATATTGCTCCGCAAATTTATTGGAGTATCGGCTTTAACGCAGCG 951
|.|||||.||.||.|||||||||||.|||||.|||||.|||||.||.|||
RBAM_018400__ 908 TTGATTACATCGCACCGCAAATTTACTGGAGCATCGGATTTAAAGCGGCG 957
BSNT_03024___ 952 GCTTACGACGTGCTGGCTGATTGGTGGAGCAATGAAGTCAAAAATAGGCC 1001
||.||.|||||..|.||.|||||||||.|.||.|||||.||.|||.||||
RBAM_018400__ 958 GCATATGACGTCTTAGCGGATTGGTGGGGAAAAGAAGTGAACAATCGGCC 1007
BSNT_03024___ 1002 TGTTCACTTATATATTGGCCAGGCAGCATATAAAATCAATAACAATTTTG 1051
.||.||.||||||||.||.||||||||.|||||||||||.|||||...||
RBAM_018400__ 1008 GGTGCATTTATATATCGGGCAGGCAGCTTATAAAATCAACAACAACGCTG 1057
BSNT_03024___ 1052 ATCC-GCCTTGGTCCGACCCTGAGGAATATGTGCGG-CAAATCACTTTGA 1099
|||| ||| |||.|||||||.|.||||||.| |.|| ||.||.|||.|.|
RBAM_018400__ 1058 ATCCTGCC-TGGGCCGACCCGGGGGAATACG-GAGGACAGATTACTCTAA 1105
BSNT_03024___ 1100 ACCG----CCAGCTTGAACTGGTGAAAGGAAGCATGCATTTCAGCCTCAA 1145
||.| .||||.|| |.|.|||||.|||.||||||||||..|.||
RBAM_018400__ 1106 ACAGGGGATCAGCATG----GATAAAAGGCAGCTTGCATTTCAGTTTAAA 1151
BSNT_03024___ 1146 GGACCTCAACAAAAATCCGCTTGGCATCAAAGACAGGCTTATCGCCGATC 1195
|||..|.|||...||||||||.|...|.|||.||.|..|.|||...||..
RBAM_018400__ 1152 GGATTTAAACCGTAATCCGCTCGATGTGAAAAACCGTTTGATCAAGGACA 1201
BSNT_03024___ 1196 TTTACAGCAAGCCGGCACTGGTTCCGCAAATGCCTTGGCT-TGACAATAC 1244
|.||||||.||||.||..|..||||..|.||||||||||| .||| ||.|
RBAM_018400__ 1202 TGTACAGCCAGCCCGCGATAATTCCCGAGATGCCTTGGCTCGGAC-ATTC 1250
BSNT_03024___ 1245 CGCCCCAAAAAAACCGAAGCTTACGAAAGTCA-----CCGAAGACAAAAA 1289
|||...|||||||||| .|| |||| .||.|||..||..
RBAM_018400__ 1251 CGCTTTAAAAAAACCG--TCT-------GTCAAACGGGCGGAGAAGAATG 1291
BSNT_03024___ 1290 C----GGCAATCTTCTGCAGATTAAAGAT-CACCCATCAAATCAAAAAAC 1334
| |||.||...||..|.|||.||||| | .||||| .|||
RBAM_018400__ 1292 CTTCAGGCCATACACTCTATATTGAAGATGC------GAAATC---CAAC 1332
BSNT_03024___ 1335 G--AAAGAAACAGCCTATTATGCGATATACAGAGCCG--AAGGGAAAAAG 1380
| |||.||||.||.|||||.||.||.|||.|.||.| ||||| ||||
RBAM_018400__ 1333 GGTAAAAAAACGGCTTATTACGCCATTTACCGCGCAGAAAAGGG--AAAG 1380
BSNT_03024___ 1381 CAGAACACATT--GCTGGCAACGCAAAGAAAAACA----CATGAGCAGCA 1424
||| .|..||| | |||..||....||||||||| ||.| |..|||
RBAM_018400__ 1381 CAG-CCTTATTTAG-TGGATACAGTCAGAAAAACATCGTCACG-GACGCA 1427
BSNT_03024___ 1425 AACCTTCTTAGATA-----ACACGGCAGATCCTAACAAGAA--ATATACG 1467
.||.||.|.||||| ||.|||..|| |||.| .|..||.
RBAM_018400__ 1428 GACATTTTCAGATACTGATACTCGGGCGA-------AAGGAGCCTGCACC 1470
BSNT_03024___ 1468 TATTAT-GTCACTTCAGCAGACCGGCTTCATAACGAAAGCAAGGCTTCC- 1515
|| ||| ||.|||||.|..|||.|||||||..|.||.|||.|..|.|||
RBAM_018400__ 1471 TA-TATCGTTACTTCCGTTGACAGGCTTCACCATGAGAGCCATCCCTCCG 1519
BSNT_03024___ 1516 --AAACGAACAACAAAATAA 1533
|||||.||....|||||.
RBAM_018400__ 1520 CAAAACGGACGGTTAAATAG 1539
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.