Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03015 and RBAM_018340

See Amino acid alignment / Visit BSNT_03015 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:53
# Commandline: needle
#    -asequence dna-align/BSNT_03015___yngF.1.9828.seq
#    -bsequence dna-align/RBAM_018340___yngF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03015___yngF-RBAM_018340___yngF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03015___yngF-RBAM_018340___yngF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03015___yngF
# 2: RBAM_018340___yngF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 833
# Identity:     535/833 (64.2%)
# Similarity:   535/833 (64.2%)
# Gaps:         103/833 (12.4%)
# Score: 1596.5
# 
#
#=======================================

BSNT_03015___      1 ATGGGAGA-------CTCTATTCTTTTTACTGTTAAAAATGAACATATGG     43
                     ||||||||       .|.|||||..|   ||||.||.|   |||| ||.|
RBAM_018340__      1 ATGGGAGATTGCGTTTTGTATTCCGT---CTGTCAAGA---AACA-ATCG     43

BSNT_03015___     44 CGT-TGATCACCTTTAACAGGCCTCAGGCAGCAAATGCTCTTTCAGCGGA     92
                      || |||||||..|.|||.|.||.||.||.||.||..|.||.||..|.||
RBAM_018340__     44 -GTCTGATCACGCTGAACCGCCCGCATGCGGCCAACTCGCTGTCTTCAGA     92

BSNT_03015___     93 AATGCTTAGAAACCTGCAAATGATTCTTCAG---GAAATTGAATTCAACT    139
                     ||||.||           .||.||| |.|||   |..||||||..||  |
RBAM_018340__     93 AATGATT-----------GATCATT-TACAGCGTGTGATTGAAGACA--T    128

BSNT_03015___    140 CAAA-----------CATCCGCTGCGTCATCCTCACAGGCACCGGTGAAA    178
                     ||||           |||.||.||.|||||.|||||.|||||||| |||.
RBAM_018340__    129 CAAAAACTCGCCATCCATTCGTTGTGTCATTCTCACCGGCACCGG-GAAC    177

BSNT_03015___    179 AAGCGTTTTGTGCAGGGGCAGACCTAAAGGAA----CGGATAAAACTGAA    224
                     |  |.|||||.||.||.||.||..||||.|||    |||..|    ||||
RBAM_018340__    178 A--CATTTTGCGCCGGTGCTGATTTAAAAGAAAGAGCGGGGA----TGAA    221

BSNT_03015___    225 AGAAGATCAGGTTCTGGAAA-------GTGTATCTCTCATTCAAAGAACG    267
                     ..|.||.||.|||..|.|||       |.|||||..|.|       ||||
RBAM_018340__    222 TCATGAACAAGTTAAGCAAAGCGTCAGGCGTATCGGTGA-------AACG    264

BSNT_03015___    268 GCGGCTTTACTTGATGCCTTGCCGCAGCCGGTCATAGCTGCGATAAATGG    317
                     ||.||.|...||||.||..|.||||||||||||||.||.|||.|.||.||
RBAM_018340__    265 GCCGCATCCATTGAAGCTCTCCCGCAGCCGGTCATTGCAGCGCTGAACGG    314

BSNT_03015___    318 AAGCGCATTAGGCGGCGGACTAGAATTGGCATTGGCATGCGACCTTCGAA    367
                     ||.|||..|.||.||.||.||.|||.|.||..|.||.|||||..|..|||
RBAM_018340__    315 AACCGCTGTCGGAGGAGGCCTTGAACTCGCTCTCGCCTGCGATATCAGAA    364

BSNT_03015___    368 TCGCAGCTGAATCAGCTGTG-----CTGGGACTTCCGGAAACAGGGTTAG    412
                        ||||.|  |||||.|.|     ||.||.|||||.|||||||||.|.|
RBAM_018340__    365 ---CAGCCG--TCAGCCGGGCGGGCCTCGGCCTTCCTGAAACAGGGCTTG    409

BSNT_03015___    413 CTATTATCCCGGGCGCTGGAGGGACCCAAAGGCTGCCCCGGCTGATTGGC    462
                     |.||.||.||.||.||.||.||.||.||.||.|||||||||||.||.|||
RBAM_018340__    410 CGATCATTCCCGGAGCGGGCGGAACGCAGAGACTGCCCCGGCTTATCGGC    459

BSNT_03015___    463 AGAGGAAAAGCAAAAGAATTCATTTATACAGGCAGACGCGTGACCGCACA    512
                     ...||....|||||||||||.||.|||||.|||.||.|..|..|.|||.|
RBAM_018340__    460 CCCGGCGCGGCAAAAGAATTGATCTATACCGGCCGAAGACTTTCTGCAGA    509

BSNT_03015___    513 CGAAGCAAAAGAAATCGGCCTTGTAGAGCATGTCACGGCTCCTTG-----    557
                     .||.|.||||||.||....||..|.||||||||         |||     
RBAM_018340__    510 AGAGGGAAAAGACATGAAGCTGATCGAGCATGT---------TTGTGAAG    550

BSNT_03015___    558 ----TGACCTTATGCCAAAAGCAGAGGAACTGGCCGCAGC--CATTTCTG    601
                         |||.||||||..|||||||.|.|.||||||||  ||  |||..|.|
RBAM_018340__    551 CCGATGAACTTATGGAAAAAGCAAAAGCACTGGCCG--GCCGCATCGCCG    598

BSNT_03015___    602 CCAACGGGCCGATCGCTGTCCGTCAGGCTAAATTTGCAATCAATAAAGGA    651
                     |.||.|||||||||||.|||.|.||.||.||||..||.||.||.||.||.
RBAM_018340__    599 CTAATGGGCCGATCGCCGTCAGACAAGCAAAATCCGCGATAAACAAGGGT    648

BSNT_03015___    652 TTGGAGACAGATCTCGCTACAGGCCTTGCGATTGAACAAAAAGCGTATGA    701
                     .||||||||||||||..||||||.||.|..||.||||.||||||.|||||
RBAM_018340__    649 CTGGAGACAGATCTCAATACAGGGCTCGAAATCGAACGAAAAGCATATGA    698

BSNT_03015___    702 ACAAACCATCCCGACAAAAGACAGGAG-AGAAGGGCTTCAGGCCTTTCAA    750
                     ||||..|||.||.|||...|||| ||| |||.||.||.|..||.|||.||
RBAM_018340__    699 ACAAGTCATTCCCACACTTGACA-GAGAAGAGGGCCTGCGCGCTTTTAAA    747

BSNT_03015___    751 GAAAAAAGACGGGCCGTATACAAGGGAATATAA    783
                     ||||||||||...|.|.||||||.||||.||||
RBAM_018340__    748 GAAAAAAGACCCCCTGAATACAAAGGAAAATAA    780


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03015 and RBAM_018340

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
