Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03011 and RBAM_018320
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:52
# Commandline: needle
# -asequence dna-align/BSNT_03011___yngC.1.9828.seq
# -bsequence dna-align/RBAM_018320___yngC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03011___yngC-RBAM_018320___yngC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03011___yngC-RBAM_018320___yngC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03011___yngC
# 2: RBAM_018320___yngC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 608
# Identity: 448/608 (73.7%)
# Similarity: 448/608 (73.7%)
# Gaps: 28/608 ( 4.6%)
# Score: 1595.0
#
#
#=======================================
BSNT_03011___ 1 GTGGGCAGTTTGATAAGCGAAATTTTAACATGGCTGACGAACATGGGATA 50
|||||||.|||.||.||.|||||.|||.|.||||||||.|..|||||.||
RBAM_018320__ 1 GTGGGCAATTTTATTAGTGAAATATTATCCTGGCTGACAAGTATGGGCTA 50
BSNT_03011___ 51 TGCGGGTATTGCGATTGGGTTAATGATTGAAATTATTCCGAGTGAGATTG 100
|...||.||||||.|.||.||||||||.|||||.|||||||||||.||.|
RBAM_018320__ 51 TTTAGGGATTGCGCTCGGATTAATGATCGAAATCATTCCGAGTGAAATCG 100
BSNT_03011___ 101 TATTAGCTTATGGAGGCTATATGGTATCGGAAGGCACGATTGGTTTTATT 150
|..|.|||||.|||||.||||||||.||.|||||||||||..|.|||||.
RBAM_018320__ 101 TTCTGGCTTACGGAGGATATATGGTGTCAGAAGGCACGATCAGCTTTATC 150
BSNT_03011___ 151 GGCGCAATTATTGCGGGTGTTATCGGGGGCACCATTGCCCAGATCTTTAT 200
|||||.|||.|.||.|||||.||||||||.||.||.||.|||..||||||
RBAM_018320__ 151 GGCGCCATTGTCGCCGGTGTGATCGGGGGAACGATCGCGCAGTGCTTTAT 200
BSNT_03011___ 201 TTACTGGATCGGCCGCTATGGCGGCAGGCCATTTCTGGACAAATACGGGA 250
|||||||||||.|||.|||||.||..||||.|||.|||||||.|||||.|
RBAM_018320__ 201 TTACTGGATCGCCCGTTATGGGGGACGGCCGTTTTTGGACAAGTACGGCA 250
BSNT_03011___ 251 AGTATTTATTGATTAAAAAGCATCATATCGACATGT--CGGAAAACTGGT 298
||||.|||.|..|.||||||||||||.|.| |||| ||||||||||||
RBAM_018320__ 251 AGTACTTACTTCTGAAAAAGCATCATGTTG--ATGTTGCGGAAAACTGGT 298
BSNT_03011___ 299 TTCAGAAATACGGCGCCGGAGTTGTCTTCTCGGCTCGTTTTATACCGGTT 348
|||.....|||||||||||.|||||.||||||||.||.|||||.|||||.
RBAM_018320__ 299 TTCGCCGTTACGGCGCCGGCGTTGTGTTCTCGGCGCGGTTTATCCCGGTC 348
BSNT_03011___ 349 GTCAGACATGCCATATCCATTCCGGCAGGTATTGCCAGAATGCCT-TTTC 397
|||||||||||.||.|||||.|||||.||..||||.|.||||||| ||||
RBAM_018320__ 349 GTCAGACATGCGATCTCCATCCCGGCCGGCCTTGCGAAAATGCCTCTTTC 398
BSNT_03011___ 398 TCAAATTTGTGGTACTGACTGTGCTTGCTATCATTCCATGGTCTATTCTG 447
|||.|||||..||.||||....||.||.||.|||||.||||||.|..|.
RBAM_018320__ 399 -CAAGTTTGTCATATTGACGACACTCGCCATTATTCCGTGGTCTGTCATT 447
BSNT_03011___ 448 TTTGTTTATTTAGGCATA-CAGCTAGGAAGCCAGTGGGATGATGTTGAGA 496
||.||||||.|.|| .|| |||||.||..|.||||||.|.||.||.||.|
RBAM_018320__ 448 TTCGTTTATCTCGG-GTATCAGCTCGGGGGACAGTGGAAAGACGTAGACA 496
BSNT_03011___ 497 -ATATAGCAGGCACTTATACAACACCGATTATGATATTGGCTGTTGTCGT 545
.||| ||.||.|..||||||||.|||||.||.|||||||||.|.||..|
RBAM_018320__ 497 GCTAT-GCCGGAATGTATACAACTCCGATCATTATATTGGCTCTCGTATT 545
BSNT_03011___ 546 GATAGCCCTTTATTTTGTGATTAAGAAACGTACAGCCAT---ATTTAAAC 592
.||.|...|||||||.||..|.|||||| || ||..|.||
RBAM_018320__ 546 TATTGTTGTTTATTTCGTTGTGAAGAAA---------ATGAGATCAAGAC 586
BSNT_03011___ 593 ---GATAG 597
||
RBAM_018320__ 587 TGTGA--- 591
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