Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04399 and RBAM_018260
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:51
# Commandline: needle
# -asequence dna-align/BSNT_04399___bioD.1.9828.seq
# -bsequence dna-align/RBAM_018260___bioD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04399___bioD-RBAM_018260___bioD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04399___bioD-RBAM_018260___bioD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04399___bioD
# 2: RBAM_018260___bioD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 757
# Identity: 474/757 (62.6%)
# Similarity: 474/757 (62.6%)
# Gaps: 116/757 (15.3%)
# Score: 1387.5
#
#
#=======================================
BSNT_04399___ 1 TTGAGGGGTTTTTTTGTGACGGGAACTGATACAGAAGTAGGGAAAACGGT 50
.||||..||||||||||.||.|||||.|||||.|..||.||.|||||..|
RBAM_018260__ 1 ATGAGAAGTTTTTTTGTTACAGGAACAGATACCGGCGTCGGAAAAACCAT 50
BSNT_04399___ 51 TATATCCAGCGGTCTTGCTGCTTTATT--GAAAGAACATAATAG--AGAT 96
..|.||..||||.|||||.||...||| |..||| ||.|| .|||
RBAM_018260__ 51 CGTTTCTTGCGGACTTGCCGCGGCATTCCGGCAGA----AACAGGCGGAT 96
BSNT_04399___ 97 GTTGGGGTGTATAAACCATTTTTAAGCGGGATATCACGCCATCATCCAGA 146
.|.||.||||.|||.||.|||||||||||..|..|.||...||||||.||
RBAM_018260__ 97 ATCGGAGTGTTTAAGCCGTTTTTAAGCGGCGTGCCTCGGACTCATCCGGA 146
BSNT_04399___ 147 TAGTGATA-CTAG-TCTGCTGAAAGACATGTCGCAGACCAGTCTTTCTCA 194
.|||||.| ||.| ||| |||||||||||||.||.|||...||.|||||
RBAM_018260__ 147 AAGTGACACCTCGCTCT--TGAAAGACATGTCACAAACCGCACTGTCTCA 194
BSNT_04399___ 195 TGAAGACATTACGCCTTTTGCCTTCAAGGCGCCGCTTGCACCATACGTTG 244
||||||.||.|||||.||||..|..||.|.|||||||||.||.|||...|
RBAM_018260__ 195 TGAAGAAATCACGCCATTTGAATGGAAAGAGCCGCTTGCCCCGTACACGG 244
BSNT_04399___ 245 CAGGGAAACTTGAGGGAAAGACTGTCACCATGGAAGAGGTTTTAAGCCAT 294
|.|..|..||||||||.||..|.||.|.|||||..||.|| |||
RBAM_018260__ 245 CCGCCATGCTTGAGGGGAAATCCGTGAGCATGGCGGATGT-------CAT 287
BSNT_04399___ 295 TGGGGGC-----GGATTAGAG---AAAAA----CATGAATGCTTCATCGT 332
||| |||.|| || ||||| |||||.||.||||||||
RBAM_018260__ 288 ----GGCCCACTGGAGTA-AGATCAAAAATCGTCATGAGTGTTTCATCGT 332
BSNT_04399___ 333 AGAAGGTGCGGGCGGTATTTCTGTGCCATTGGGAGAGGACTATTTGGTCA 382
.||.||.||.|||||.|||||.||.||..|.||.||..|.|||||.||||
RBAM_018260__ 333 TGAGGGGGCAGGCGGCATTTCCGTCCCGCTTGGTGAAAATTATTTAGTCA 382
BSNT_04399___ 383 GTCATGTCATAAAAGCGTTGCAGCTTCCCATG--ATT----------ATT 420
||.||.|.||||||| ||||| ||| |||
RBAM_018260__ 383 GTGATCTGATAAAAG------------CCATGGAATTACCGGCAGTGATT 420
BSNT_04399___ 421 GTGGCGCGTCCTCACCTTGGAACCATTAATCATACCTTTTTAACTGTCAA 470
||..|..|.|||.|.||.||||||||.||.||.||.|.||||||.||..|
RBAM_018260__ 421 GTCACCAGGCCTGATCTCGGAACCATCAACCACACATATTTAACCGTTGA 470
BSNT_04399___ 471 ATATGCAGAAAGCATGGGGCTTCCAA----TTGCCGGAATTATCATCAAT 516
||||||..|||.|||||||.| | ||..|||.|||||.|||||.
RBAM_018260__ 471 ATATGCGAAAAACATGGGGAT----AGAGGTTCTCGGCATTATTATCAAC 516
BSNT_04399___ 517 GGAATCAGTGACTCTCCTGA------------TGAAGATGAAAAAACCAA 554
||..|.|| || || ||.|||||.| |||
RBAM_018260__ 517 GGCGTAAG----------GAGCAGGCCGGGGCTG--GACGAAAAGA-CAA 553
BSNT_04399___ 555 TCCTGAG-ATGATTGAGCGCTTATGCGGTGTTCCGATTTTAGGGGTTACG 603
.||.||| ||||||||....||||||...|||||||||||.||..|.||.
RBAM_018260__ 554 ACCCGAGCATGATTGAAACATTATGCAAAGTTCCGATTTTGGGAATCACA 603
BSNT_04399___ 604 CCAAAGCTTGCCAACGTTAC----GAAAGAAACGGTTCTACATATGGT-- 647
||.|||||.|...|||||.| ||||..| |||.|||.|||.|
RBAM_018260__ 604 CCGAAGCTGGATCACGTTTCATCGGAAAACA----TTCAACACATGATTG 649
BSNT_04399___ 648 --AAAAGACCATATCAATCTATCATTACTGATGAAT------CAAATGGG 689
||| |||||..||.|.||.|...|.|||||| ||||||||
RBAM_018260__ 650 AGAAA----CATATAGATGTTTCCTCTTTCATGAATCTGACACAAATGGG 695
BSNT_04399___ 690 GGTATGA 696
|..||.|
RBAM_018260__ 696 GAGATAA 702
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