Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04399 and RBAM_018260

See Amino acid alignment / Visit BSNT_04399 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:51
# Commandline: needle
#    -asequence dna-align/BSNT_04399___bioD.1.9828.seq
#    -bsequence dna-align/RBAM_018260___bioD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04399___bioD-RBAM_018260___bioD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04399___bioD-RBAM_018260___bioD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04399___bioD
# 2: RBAM_018260___bioD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 757
# Identity:     474/757 (62.6%)
# Similarity:   474/757 (62.6%)
# Gaps:         116/757 (15.3%)
# Score: 1387.5
# 
#
#=======================================

BSNT_04399___      1 TTGAGGGGTTTTTTTGTGACGGGAACTGATACAGAAGTAGGGAAAACGGT     50
                     .||||..||||||||||.||.|||||.|||||.|..||.||.|||||..|
RBAM_018260__      1 ATGAGAAGTTTTTTTGTTACAGGAACAGATACCGGCGTCGGAAAAACCAT     50

BSNT_04399___     51 TATATCCAGCGGTCTTGCTGCTTTATT--GAAAGAACATAATAG--AGAT     96
                     ..|.||..||||.|||||.||...|||  |..|||    ||.||  .|||
RBAM_018260__     51 CGTTTCTTGCGGACTTGCCGCGGCATTCCGGCAGA----AACAGGCGGAT     96

BSNT_04399___     97 GTTGGGGTGTATAAACCATTTTTAAGCGGGATATCACGCCATCATCCAGA    146
                     .|.||.||||.|||.||.|||||||||||..|..|.||...||||||.||
RBAM_018260__     97 ATCGGAGTGTTTAAGCCGTTTTTAAGCGGCGTGCCTCGGACTCATCCGGA    146

BSNT_04399___    147 TAGTGATA-CTAG-TCTGCTGAAAGACATGTCGCAGACCAGTCTTTCTCA    194
                     .|||||.| ||.| |||  |||||||||||||.||.|||...||.|||||
RBAM_018260__    147 AAGTGACACCTCGCTCT--TGAAAGACATGTCACAAACCGCACTGTCTCA    194

BSNT_04399___    195 TGAAGACATTACGCCTTTTGCCTTCAAGGCGCCGCTTGCACCATACGTTG    244
                     ||||||.||.|||||.||||..|..||.|.|||||||||.||.|||...|
RBAM_018260__    195 TGAAGAAATCACGCCATTTGAATGGAAAGAGCCGCTTGCCCCGTACACGG    244

BSNT_04399___    245 CAGGGAAACTTGAGGGAAAGACTGTCACCATGGAAGAGGTTTTAAGCCAT    294
                     |.|..|..||||||||.||..|.||.|.|||||..||.||       |||
RBAM_018260__    245 CCGCCATGCTTGAGGGGAAATCCGTGAGCATGGCGGATGT-------CAT    287

BSNT_04399___    295 TGGGGGC-----GGATTAGAG---AAAAA----CATGAATGCTTCATCGT    332
                         |||     |||.|| ||   |||||    |||||.||.||||||||
RBAM_018260__    288 ----GGCCCACTGGAGTA-AGATCAAAAATCGTCATGAGTGTTTCATCGT    332

BSNT_04399___    333 AGAAGGTGCGGGCGGTATTTCTGTGCCATTGGGAGAGGACTATTTGGTCA    382
                     .||.||.||.|||||.|||||.||.||..|.||.||..|.|||||.||||
RBAM_018260__    333 TGAGGGGGCAGGCGGCATTTCCGTCCCGCTTGGTGAAAATTATTTAGTCA    382

BSNT_04399___    383 GTCATGTCATAAAAGCGTTGCAGCTTCCCATG--ATT----------ATT    420
                     ||.||.|.|||||||            |||||  |||          |||
RBAM_018260__    383 GTGATCTGATAAAAG------------CCATGGAATTACCGGCAGTGATT    420

BSNT_04399___    421 GTGGCGCGTCCTCACCTTGGAACCATTAATCATACCTTTTTAACTGTCAA    470
                     ||..|..|.|||.|.||.||||||||.||.||.||.|.||||||.||..|
RBAM_018260__    421 GTCACCAGGCCTGATCTCGGAACCATCAACCACACATATTTAACCGTTGA    470

BSNT_04399___    471 ATATGCAGAAAGCATGGGGCTTCCAA----TTGCCGGAATTATCATCAAT    516
                     ||||||..|||.|||||||.|    |    ||..|||.|||||.|||||.
RBAM_018260__    471 ATATGCGAAAAACATGGGGAT----AGAGGTTCTCGGCATTATTATCAAC    516

BSNT_04399___    517 GGAATCAGTGACTCTCCTGA------------TGAAGATGAAAAAACCAA    554
                     ||..|.||          ||            ||  ||.|||||.| |||
RBAM_018260__    517 GGCGTAAG----------GAGCAGGCCGGGGCTG--GACGAAAAGA-CAA    553

BSNT_04399___    555 TCCTGAG-ATGATTGAGCGCTTATGCGGTGTTCCGATTTTAGGGGTTACG    603
                     .||.||| ||||||||....||||||...|||||||||||.||..|.||.
RBAM_018260__    554 ACCCGAGCATGATTGAAACATTATGCAAAGTTCCGATTTTGGGAATCACA    603

BSNT_04399___    604 CCAAAGCTTGCCAACGTTAC----GAAAGAAACGGTTCTACATATGGT--    647
                     ||.|||||.|...|||||.|    ||||..|    |||.|||.|||.|  
RBAM_018260__    604 CCGAAGCTGGATCACGTTTCATCGGAAAACA----TTCAACACATGATTG    649

BSNT_04399___    648 --AAAAGACCATATCAATCTATCATTACTGATGAAT------CAAATGGG    689
                       |||    |||||..||.|.||.|...|.||||||      ||||||||
RBAM_018260__    650 AGAAA----CATATAGATGTTTCCTCTTTCATGAATCTGACACAAATGGG    695

BSNT_04399___    690 GGTATGA    696
                     |..||.|
RBAM_018260__    696 GAGATAA    702


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