Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02946 and RBAM_018030
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:48
# Commandline: needle
# -asequence dna-align/BSNT_02946___yndH.1.9828.seq
# -bsequence dna-align/RBAM_018030___yndH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02946___yndH-RBAM_018030___yndH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02946___yndH-RBAM_018030___yndH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02946___yndH
# 2: RBAM_018030___yndH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 643
# Identity: 298/643 (46.3%)
# Similarity: 298/643 (46.3%)
# Gaps: 248/643 (38.6%)
# Score: 885.0
#
#
#=======================================
BSNT_02946___ 1 GTGAGTTCGATTTATGAAAAATCAATTATTAACTATCATTTGCTGCATCC 50
||||||||.|.||||.|.|.|||||.|..|||||.||
RBAM_018030__ 1 -------------ATGAAAAAGCGATTACTCATTATCAATCACTGCACCC 37
BSNT_02946___ 51 CAAGCTGCGGAAACGGTACCAATTAGACGGGTCTCAAACATTCAGCGGGA 100
.|.|||||.||||||||||..|||
RBAM_018030__ 38 GATGCTGCAGAAACGGTACAGATT-------------------------- 61
BSNT_02946___ 101 CGGGAACGATGTCAGAAATAAGCGGAGGCTCTTTTCTGGTTAGAATGCTG 150
RBAM_018030__ 61 -------------------------------------------------- 61
BSNT_02946___ 151 TTAAAGCTGGGTGTTTTTTTCAGATGCTTCTTTTCAGAAAGAGGCAAAGA 200
RBAM_018030__ 61 -------------------------------------------------- 61
BSNT_02946___ 201 CATTCCATTTACAATACAAAATAGAACTTGTCTTTTGAAATCACAACATA 250
RBAM_018030__ 61 -------------------------------------------------- 61
BSNT_02946___ 251 CAGGAATAGAATGGAATCGTACATTTATCTTTAAAGGCAAAAAACGTTTC 300
||||||||.||||||..|||||.
RBAM_018030__ 62 ---------------------------TCTTTAAAAGCAAAACGCGTTTT 84
BSNT_02946___ 301 TTTGACGCGATAATGATATATGACGAGAAAGAAAATAGAATACTTGATTT 350
|||||.||..|.|||..||||||.|||...|||||.|||||.|||||||.
RBAM_018030__ 85 TTTGATGCCGTCATGGAATATGATGAGCGGGAAAACAGAATTCTTGATTA 134
BSNT_02946___ 351 CTTCGGCAAA--CCTCATCTGCTGCTGTCTGTTTTGACGTTCGAGGCATC 398
|||||||||| ||.|||| ||.|||||||...||...||.||.||.||
RBAM_018030__ 135 CTTCGGCAAACCCCGCATC--CTACTGTCTGAACTGCATTTAGAAGCGTC 182
BSNT_02946___ 399 -TCATGAC----GGCTCTCTTACGATCACATCGGGAAAGCAATGGCTATT 443
||| ||| |||| |.|| ||.|||||.||||.|||.|||||..|
RBAM_018030__ 183 TTCA-GACGGAGGGCT-TGTT---ATTACATCCGGAAGGCAGTGGCTCCT 227
BSNT_02946___ 444 GATATGCGGAAAAAGAATCCCGTTGCCGAAATGGCTGACCG---GTACAT 490
||||.|||||||.|.|||||||.|.|||..|||||||..|| ||.||.
RBAM_018030__ 228 GATAGGCGGAAAGAAAATCCCGCTTCCGGCATGGCTGTGCGGCAGTTCAA 277
BSNT_02946___ 491 CCGTAGTTTGCGAAACGTTTGATGAAAAAAAGAATTGTTTCACCATTGAA 540
|| ||||..||..|.|.||||||..|||.||||||.||||.|||..|.
RBAM_018030__ 278 CC---GTTTATGAGGCTTATGATGAGGAAATGAATTGCTTCAGCATAAAG 324
BSNT_02946___ 541 GTGCATGTGCAAAATACAATTCTTGGCACTCTTTTCTTTTATAAAGGAAC 590
||.||||||.|||||...||.||.|||||.|||||||.|||....||.||
RBAM_018030__ 325 GTTCATGTGAAAAATCGGATACTCGGCACGCTTTTCTCTTACCGGGGGAC 374
BSNT_02946___ 591 GTTTCAGGAGGAAGAGAGAGAATCATGCAACGAAATGGCATAG 633
.||.|.|||...||||.|||||.||||| .||
RBAM_018030__ 375 TTTCCGGGAAACAGAGGGAGAAACATGC--TGA---------- 405
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