Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03293 and RBAM_017970
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:25:27
# Commandline: needle
# -asequence dna-align/BSNT_03293___kdgA.1.9828.seq
# -bsequence dna-align/RBAM_017970___kdgA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03293___kdgA-RBAM_017970___kdgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03293___kdgA-RBAM_017970___kdgA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03293___kdgA
# 2: RBAM_017970___kdgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 739
# Identity: 368/739 (49.8%)
# Similarity: 368/739 (49.8%)
# Gaps: 251/739 (34.0%)
# Score: 740.5
#
#
#=======================================
BSNT_03293___ 1 ATGGAGTCCAAAGT------TGTT--GAAAACCGTCTGAAAGAAGCA-AA 41
|||..| ||.|||| | || |||||.|.|||| .|.||| ||
RBAM_017970__ 1 ATGCTG-CCTAAGTACGCCAT-TTACGAAAAACTTCTG---CATGCACAA 45
BSNT_03293___ 42 GCTGATTGCAGTCATTCGTTCAAAGGATACA-------CAGGAGGCCTGT 84
| ||.|.||.||||| ||||..||| ||.|||||
RBAM_017970__ 46 G-TGGTGGCTGTCAT-------AAGGGGACAAAACAGCCAAGAGGC---- 83
BSNT_03293___ 85 CAGCAGATTGAGAGTTTGTTAGATAA--------------AGGGATTCGT 120
|.|||| ||||| .|.|| |||.||..|.
RBAM_017970__ 84 -----GCTTGA-AGTTT----CAAAAGCGGCCATTTCAGGAGGTATCAGC 123
BSNT_03293___ 121 GCAGTTGAAGTGACGTATACAACCCCCG--GGGCATCAGAT---ATTATC 165
||..||||..|.||.||.|||||.||.| |.|.| |||| .|||..
RBAM_017970__ 124 GCCATTGAGCTTACATACACAACTCCTGAAGTGGA--AGATGTCTTTAAG 171
BSNT_03293___ 166 GAATCCTTCCGTAATAGGGAAGATATTTTAATTGGCGCGGGCACTGTCAT 215
||| .||||..|| .||||||||.|..||||.||.||..||||.||
RBAM_017970__ 172 GAA---CTCCGGCAT---CAAGATATTCTTCTTGGAGCCGGTTCTGTAAT 215
BSNT_03293___ 216 CACCGCGCAGCAAGCTGGG-----GAAGCTGCTGAGGCTGGCGCGCAGTT 260
|| |||.|.|| |||.|..|| ||.||
RBAM_017970__ 216 -----------------GGATACAGAAACGGC-GAGACACGC---CATTT 244
BSNT_03293___ 261 TATTGTCAGTCCGGGTTTTTCAGCTGATCTTGCTGAACATCTATC-TTTT 309
||| |.|||...||| .|.|||.| ||.||.|| ||||
RBAM_017970__ 245 TAT--------CAGGTGCCTCA-TTTATCGT------CAGCTCTCATTTT 279
BSNT_03293___ 310 GT-AAAGACACATTATATC-------CC----CGGCGTCTTGAC------ 341
|| |||||.|.|..||.|| || |.|||| ||
RBAM_017970__ 280 GTAAAAGAGATAGCATCTCTATGCAACCAGTACAGCGT----ACCGTATC 325
BSNT_03293___ 342 -TCCGAGCGAAATTATGGA--AGCG---CTGACATTCGGTTTT------- 378
||||.| |||.| |||| ||||.|| ||.|||
RBAM_017970__ 326 TTCCGGG-------ATGCATGAGCGTGTCTGATAT--GGCTTTGGCGCTC 366
BSNT_03293___ 379 --------ACGACAT----TAAAGCTGTTCCC----AAGCGGTGTGTTTG 412
|.|..|| ||||||||||||| || |..|||||
RBAM_017970__ 367 GAAGCCGGATGTGATGTGGTAAAGCTGTTCCCCGCTAA----TTCGTTTG 412
BSNT_03293___ 413 GCATCC--CGTTTATGAA-------AAATTTAGCGGGTCCTTTCCCGCAG 453
|.|| |.|||||.|| || .||||||||.|||.|.
RBAM_017970__ 413 --ACCCTTCATTTATCAAGTCGGTCAA-------CGGTCCTTTGCCGAAT 453
BSNT_03293___ 454 GTGACCTTTATTCCGACAGGCGGGAT-ACAT----CCGTCTGAAGTGCCG 498
||...|.||||.|||||.||.||.|| .||| |.|..|||| .
RBAM_017970__ 454 GTCCGCATTATGCCGACCGGGGGTATCTCATTAAACAGCATGAA-----T 498
BSNT_03293___ 499 GATTGGCTTAGAGCCGGAGCTGGCGCCGTTGGAGTCGGCAGCCAGCTGGG 548
||.|||||....||||||||.|.|||.||.||.||.||.|||.| ||.|.
RBAM_017970__ 499 GACTGGCTCTCTGCCGGAGCGGTCGCGGTCGGTGTGGGAAGCGA-CTTGA 547
BSNT_03293___ 549 C---AGCTGTTCAAAA--GAGGATTTGCAG--GCTGTTTTCC-------- 583
| ||||..|||||| |.||.|.||.|| ||.||.|.||
RBAM_017970__ 548 CAAAAGCTTATCAAAAGGGCGGCTATGAAGCTGCCGTATCCCTCAGCAAA 597
BSNT_03293___ 584 ----------------------AA---------GTGTAA 591
|| ||||||
RBAM_017970__ 598 GAATACGTCTGCCGAAAAAACGAATATACGGGGGTGTAA 636
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