Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02996 and RBAM_017930
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:51
# Commandline: needle
# -asequence dna-align/BSNT_02996.1.9828.seq
# -bsequence dna-align/RBAM_017930___ynfC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02996-RBAM_017930___ynfC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02996-RBAM_017930___ynfC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02996
# 2: RBAM_017930___ynfC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 368
# Identity: 279/368 (75.8%)
# Similarity: 279/368 (75.8%)
# Gaps: 28/368 ( 7.6%)
# Score: 1042.0
#
#
#=======================================
BSNT_02996 1 TTGAAAAAAGTAACGATATTGAAAGCATCCATCTTATTCTTGGCGATTGC 50
|||||||||.|...|.|.||.|||||.||.||.|||||.||.||||||||
RBAM_017930__ 1 TTGAAAAAAATCTTGTTTTTAAAAGCTTCTATTTTATTTTTAGCGATTGC 50
BSNT_02996 51 CAGTTTTCATTTGCTCTCAATTCCCCACGCCTTTGATATCGGTCATCATT 100
.||.||||||||||||||.||||||||.||.|||||||..|.||||||||
RBAM_017930__ 51 AAGCTTTCATTTGCTCTCCATTCCCCATGCGTTTGATACTGCTCATCATT 100
BSNT_02996 101 ATAAAGCCGTAGCCGACCAGCAGGAAATGCATGAAATGAAAGCCGGCCAA 150
.||||||.|||||||||||||||||||||||.||||||||.|||||||||
RBAM_017930__ 101 TTAAAGCGGTAGCCGACCAGCAGGAAATGCACGAAATGAAGGCCGGCCAA 150
BSNT_02996 151 AATGCTGATGATGAGAAGAAATCCATCACAGGGGCATTTACACTGAC--C 198
|||||||||||||||||.|||||..|.||.||..|||.||...|||| |
RBAM_017930__ 151 AATGCTGATGATGAGAAAAAATCGCTGACGGGCTCATATATCTTGACGGC 200
BSNT_02996 199 GCTTTATGGGCAATGGCTG-TTCTG-CT-GCTGACCGCTGAAAGCAAAAG 245
||||| |.||.| ||||| || .||||.|| |||.|.||
RBAM_017930__ 201 GCTTT--------TTGCCGCTTCTGTCTCACTGATCG-TGATATCA---- 237
BSNT_02996 246 TACGGGATAC--------TCCCGCAGACGTCAGCGGAAAAAAAGCTTTAT 287
.||.|||.|| |||||.|||.|.|||||.||.|||||||||.|
RBAM_017930__ 238 GACAGGAGACGCCCCGCTTCCCGGAGAAGACAGCGAAAGAAAAGCTTTTT 287
BSNT_02996 288 ACTGGCCAAATTTTATCAATCGTCTTATTTCGGCAAACTTCATGTTCAAC 337
|.|.||.|||||||||||.||.||||||||||...|.|||||||||||||
RBAM_017930__ 288 AATCGCTAAATTTTATCAGTCCTCTTATTTCGATGAGCTTCATGTTCAAC 337
BSNT_02996 338 ATCACCCGAT-TATGTAA 354
||| .||.|| |||||||
RBAM_017930__ 338 ATC-GCCTATCTATGTAA 354
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