Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02994 and RBAM_017910
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:51
# Commandline: needle
# -asequence dna-align/BSNT_02994___parC.1.9828.seq
# -bsequence dna-align/RBAM_017910___parC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02994___parC-RBAM_017910___parC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02994___parC-RBAM_017910___parC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02994___parC
# 2: RBAM_017910___parC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2442
# Identity: 1903/2442 (77.9%)
# Similarity: 1903/2442 (77.9%)
# Gaps: 39/2442 ( 1.6%)
# Score: 7315.0
#
#
#=======================================
BSNT_02994___ 1 TTGTCACAGCCAGAATTATTTCATGATTTACCATTAGAAGAGGTGATCGG 50
.||.||||||||||||||||||||||||||||.||||||||.||.|||||
RBAM_017910__ 1 GTGGCACAGCCAGAATTATTTCATGATTTACCGTTAGAAGAAGTAATCGG 50
BSNT_02994___ 51 CGACCGTTTTGGACGCTACAGTAAATATATTATTCAAGACAGGGCGCTGC 100
|||||||||.|||||||||||||||||.||||||||||||||||||||||
RBAM_017910__ 51 CGACCGTTTCGGACGCTACAGTAAATACATTATTCAAGACAGGGCGCTGC 100
BSNT_02994___ 101 CCGATGCAAGAGACGGATTAAAGCCGGTACAGCGCAGAATTCTGTATGCG 150
||||.||..|.|||||.|||||||||||.|||||.||||||.|.||.||.
RBAM_017910__ 101 CCGACGCTCGTGACGGTTTAAAGCCGGTGCAGCGGAGAATTTTATACGCC 150
BSNT_02994___ 151 ATGCATACAGATGGAAACACGTTTGATAAAAACTTCAGAAAAGCGGCCAA 200
|||||..|.||.|||||.||.||.||||||||.|||.|.||||||||.||
RBAM_017910__ 151 ATGCACGCGGACGGAAATACATTCGATAAAAATTTCCGTAAAGCGGCGAA 200
BSNT_02994___ 201 AACGGTCGGTAACGTCATCGGTAACTATCATCCGCACGGTGACAGCTCGG 250
|||||||||.|||||.||||||||.|||||||||||||||||||||||.|
RBAM_017910__ 201 AACGGTCGGAAACGTTATCGGTAATTATCATCCGCACGGTGACAGCTCTG 250
BSNT_02994___ 251 TTTATGAAGCAATGGTGCGGATGAGCCAGGATTGGAAAGTTCGTAATGTG 300
||||||||||.|||||||||||||||||||||||||||||.||.||||||
RBAM_017910__ 251 TTTATGAAGCGATGGTGCGGATGAGCCAGGATTGGAAAGTGCGGAATGTG 300
BSNT_02994___ 301 TTAATCGAAATGCATGGAAACAATGGAAGCATCGACGGAGATCCCCCGGC 350
.|.||.||.|||||.||.||||||||||||||.|||||.|||||.|||||
RBAM_017910__ 301 CTGATTGAGATGCACGGCAACAATGGAAGCATTGACGGTGATCCGCCGGC 350
BSNT_02994___ 351 AGCCATGCGTTATACAGAGGCACGATTATCTCCGATTGCATCTGAGCTTC 400
.||||||||||||||.||.||..||||||||.|.||.||.||.||||||.
RBAM_017910__ 351 TGCCATGCGTTATACGGAAGCGAGATTATCTTCTATCGCGTCAGAGCTTT 400
BSNT_02994___ 401 TTCGGGATATTGACAAAAACACGGTTGAATTTGTGCCGAACTTCGATGAT 450
|.||.||.||.||.|||||.|||||||||||.||.||||||||.|||||.
RBAM_017910__ 401 TGCGTGACATCGATAAAAATACGGTTGAATTCGTTCCGAACTTTGATGAC 450
BSNT_02994___ 451 ACAAGCAAGGAGCCTGTCGTACTCCCGGCGATGTTTCCTAACCTATTGGT 500
||.||.||.||.||.||.||..|.||.||.|||||.||||||.|..|.||
RBAM_017910__ 451 ACTAGTAAAGAACCGGTTGTTTTGCCCGCCATGTTCCCTAACTTGCTTGT 500
BSNT_02994___ 501 CAACGGATCTACCGGGATTTCAGCAGGATACGCGACCGACATTCCCCCTC 550
|||||||||.||||||||||||||.||.||.|||||.||.||||||||||
RBAM_017910__ 501 CAACGGATCAACCGGGATTTCAGCGGGCTATGCGACTGATATTCCCCCTC 550
BSNT_02994___ 551 ATCATCTGGGAGAAGTCATTGATGCTGTCATTAAGCGTATTCAAATGCCT 600
||||||||||.||.|||||||||||.||||||||.||.|||.||...||.
RBAM_017910__ 551 ATCATCTGGGTGAGGTCATTGATGCCGTCATTAAACGGATTGAATCTCCG 600
BSNT_02994___ 601 TCTTGCTCTGTTGACGAACTCATGGAAGTTATTAAAGGGCCTGATTTTCC 650
..||||.|.||.||.||..|.|||.|.||.||||||||||||||.|||||
RBAM_017910__ 601 GATTGCACCGTCGATGACTTGATGCAGGTGATTAAAGGGCCTGACTTTCC 650
BSNT_02994___ 651 GACAGGCGGTATTATTCAGGGCGTTGACGGGATAAGAAAAGCTTACGAAA 700
||||||.||.||||||||.||.||.|||||.||..|.||.|||||.||||
RBAM_017910__ 651 GACAGGAGGCATTATTCAAGGAGTCGACGGCATTCGGAAGGCTTATGAAA 700
BSNT_02994___ 701 CCGGAAAAGGAAAAATCATTATCCGCGGAAAGGCTGAAATTGAAACAATC 750
||||.|||||.|||||.|||||||||||.|||||||||.|.|||.|..|.
RBAM_017910__ 701 CCGGGAAAGGCAAAATTATTATCCGCGGCAAGGCTGAAGTGGAATCCGTA 750
BSNT_02994___ 751 AGAGGCGGACGAGAACAAATTGTCATTACTGAAATTCCATTTGAAGTAAA 800
|||||.|||||.||.||.||.||||||||.||||||||.|||||||||||
RBAM_017910__ 751 AGAGGTGGACGGGAGCAGATCGTCATTACAGAAATTCCGTTTGAAGTAAA 800
BSNT_02994___ 801 TAAAGCAAACCTTGTAAAAAAAATGGACGAGTTCCGTATTGATAAAAAGG 850
.|||||.||.||.|||||.|||||||||||.|.|||.||.||.|||||.|
RBAM_017910__ 801 CAAAGCCAATCTCGTAAAGAAAATGGACGAATACCGCATAGACAAAAAAG 850
BSNT_02994___ 851 TTGAAGGCATCTCAGAGGTTCGTGATGAAACGGATCGAACAGGGCTGAGA 900
|.||||||||.||.||.||.||.||||||||.||.||.||.|||||..|.
RBAM_017910__ 851 TCGAAGGCATTTCTGAAGTCCGGGATGAAACTGACCGCACGGGGCTTCGG 900
BSNT_02994___ 901 GTGGTCATTGAACTGAAAAAAGAAGCTGATGCCAAAGGTATTTTGAATTT 950
||.|||.||||..|.||.||||||||.|||||.|||||.|||||||||||
RBAM_017910__ 901 GTCGTCGTTGAGTTAAAGAAAGAAGCCGATGCAAAAGGCATTTTGAATTT 950
BSNT_02994___ 951 CTTATACAAAAATACTGATTTGCAGATCACATATAACTTCAATATGGTAG 1000
||||||.|||||.||||||.||||||..||.||||||||.||||||||.|
RBAM_017910__ 951 CTTATATAAAAACACTGATCTGCAGACAACTTATAACTTTAATATGGTCG 1000
BSNT_02994___ 1001 CTATCCATAACCGCCGTCCGATGCTGATGAG-CTTGCCGTCTATTTTGGA 1049
|.||.|||||||||||.|||||||||||||| ||| .||.|.||..||||
RBAM_017910__ 1001 CCATACATAACCGCCGGCCGATGCTGATGAGTCTT-ACGGCCATCCTGGA 1049
BSNT_02994___ 1050 TGCATATATCGGACACCAAAAGGAAGTTGTCACAAATCGGTCCGTTTATG 1099
|||.|||||....||.||.||||||||.||.|||||.||.|||||.|.||
RBAM_017910__ 1050 TGCGTATATTTCCCATCAGAAGGAAGTGGTGACAAACCGCTCCGTCTTTG 1099
BSNT_02994___ 1100 AGCTTCAAAAAGCAAAAGACAGACATCATATCGTAGAAGGGCTCATGAAA 1149
|..|.||||||||||||||..|.||.||.|||||.|||||.||.|||||.
RBAM_017910__ 1100 AATTGCAAAAAGCAAAAGAGCGGCACCACATCGTTGAAGGACTGATGAAG 1149
BSNT_02994___ 1150 GCTTTGTCTATTTTAGATGAAGTGATTGCAACAATCCGTTCTTCTAGCGA 1199
||..|||||.|.||||||||.||.||.||....|||||..|....|||||
RBAM_017910__ 1150 GCACTGTCTGTGTTAGATGAGGTCATAGCCGTCATCCGGGCAAGCAGCGA 1199
BSNT_02994___ 1200 TAAACGTGACGCTAAAAACAATTTGATCGCGAAATATGA-ATTTACGGAG 1248
.||....||.||.|||.|.||..|.||..|.|||| |.| ||||||||||
RBAM_017910__ 1200 CAAGAAAGATGCGAAACAAAACGTAATGTCTAAAT-TCACATTTACGGAG 1248
BSNT_02994___ 1249 CCTCAGGCTGAAGCCATCGTGTCATTGCAGCTATATCGTTTAACCAATAC 1298
||.|||||.|||||.|||||.||.||||||||.||||||.|.||.||.||
RBAM_017910__ 1249 CCGCAGGCCGAAGCGATCGTATCCTTGCAGCTGTATCGTCTGACAAACAC 1298
BSNT_02994___ 1299 AGATATTACAGCGCTTAAGGAAGAGGCAGAAGAGCTCGGTAAAAAAATTG 1348
.||||||||.|||||.||.||.||.||.|||||||||.|.||.||||||.
RBAM_017910__ 1299 GGATATTACGGCGCTAAAAGAGGAAGCGGAAGAGCTCAGCAAGAAAATTC 1348
BSNT_02994___ 1349 AAGAGCTCGAATCTATTCTGAGCAATGATAAAAAACTGCTAAAAGTGATT 1398
|.|||||||||.|.|||.|.||..||||||||||.|||.|||||||.|||
RBAM_017910__ 1349 AGGAGCTCGAAGCCATTTTAAGTCATGATAAAAAGCTGTTAAAAGTCATT 1398
BSNT_02994___ 1399 ACAAACAGCTTAAAAGCACTGAAAAAGAAATATGCAGATACGAGACGCTC 1448
||||.||||.|.|||..|.|||||||||..|||||.||.|..|||||.||
RBAM_017910__ 1399 ACAAGCAGCCTGAAAAAATTGAAAAAGACCTATGCTGACAGCAGACGGTC 1448
BSNT_02994___ 1449 CGTGATTGAAGAAAAAATTGAAGAAATTAAAATCAATCTCGAAGTCATGG 1498
.||.|||||||||||.|||||.|||||||||||||||||.||||||||||
RBAM_017910__ 1449 TGTCATTGAAGAAAAGATTGAGGAAATTAAAATCAATCTTGAAGTCATGG 1498
BSNT_02994___ 1499 TTGCATCTGAGGATGTATATGTAACCGTTACGAAGGATGGTTACCTAAAA 1548
||||.||||||||.||||||||.||.||.||.||.||.||.||..|||||
RBAM_017910__ 1499 TTGCCTCTGAGGACGTATATGTGACAGTCACAAAAGACGGCTATGTAAAA 1548
BSNT_02994___ 1549 CGGACGAGCCAGCGCTCATTTGCCGCTTCCAACGGACAGGACTTCGGAAT 1598
||.||.||.|||||.||||||||||||||.|||||.|||||.|||||.||
RBAM_017910__ 1549 CGAACAAGTCAGCGGTCATTTGCCGCTTCTAACGGCCAGGATTTCGGTAT 1598
BSNT_02994___ 1599 GAAAGATACGGACAGGATGCTGCATCAGTTTGAAATGAATACGACAGACG 1648
|||.|||||.||||||.||.|.||.||.||||||||||||||.||.||.|
RBAM_017910__ 1599 GAAGGATACTGACAGGCTGATTCACCAATTTGAAATGAATACAACGGATG 1648
BSNT_02994___ 1649 TGCTGCTGCTCTTTACGAACAAAGGAAGCTACATCTATTGTCCTGTTCAC 1698
|.||.|||||||||||.||.||.||||||||..|.||||||||.||||||
RBAM_017910__ 1649 TTCTCCTGCTCTTTACCAATAAGGGAAGCTATGTTTATTGTCCGGTTCAC 1698
BSNT_02994___ 1699 CAGCTGCCTGATATCAGATGGAAGGACATGGGCCAGCATTTTTCAAATCT 1748
|||||.||.||||||||.|||||.||||||||.|||||..|..|.||..|
RBAM_017910__ 1699 CAGCTTCCCGATATCAGGTGGAAAGACATGGGGCAGCACGTAACGAACAT 1748
BSNT_02994___ 1749 GATCACTATTGACCGTGATGAAACGATTGTAAAGGCCATACCGATAAAAG 1798
.|||||.|||||||||||||||||.||.||.||.||.||||||.||||||
RBAM_017910__ 1749 CATCACGATTGACCGTGATGAAACCATCGTGAAAGCTATACCGGTAAAAG 1798
BSNT_02994___ 1799 AATTTGATCCGTCGGCATATCTTCTATTCTTT---ACGAAAAACGGGATG 1845
||||||||||.||..|||| |.||||.||| |||||||||||.|||
RBAM_017910__ 1799 AATTTGATCCATCTTCATA---TTTATTGTTTATGACGAAAAACGGCATG 1845
BSNT_02994___ 1846 GTGAAAAAGACAGAGCTCACCCATTATAAAGCACAGCGTTATTCTAAGGC 1895
|||||||..||.||..|.||.|||||.|||||.||||||||.||.||.||
RBAM_017910__ 1846 GTGAAAAGAACTGAAATGACGCATTACAAAGCGCAGCGTTACTCGAAAGC 1895
BSNT_02994___ 1896 GCTTGTGGCCTTAAATCTGAAGGGTGAAGATGAACTGATTGATGTACATG 1945
||||||.|||.|.||.||.||.||.||.||.||.|||||||||||.||||
RBAM_017910__ 1896 GCTTGTTGCCCTTAACCTTAAAGGGGACGACGAGCTGATTGATGTTCATG 1945
BSNT_02994___ 1946 TAACAAATGGGGAAAGCCAGATCTTTATGGCCACTCACTTAGGGTACGGT 1995
|.|||.|.||.|..||||||.|.|||||.|||||.|...|.|||||||||
RBAM_017910__ 1946 TCACAGACGGCGGCAGCCAGCTGTTTATCGCCACCCGTCTCGGGTACGGT 1995
BSNT_02994___ 1996 CTATGGTTTGGAGAAGACGAAGTGAATGTAGTTGGCGCACGTGCGGCAGG 2045
.|||||||.||.|||||.|||||.||||||||.||.||.||||||||.||
RBAM_017910__ 1996 TTATGGTTCGGTGAAGATGAAGTAAATGTAGTCGGTGCCCGTGCGGCCGG 2045
BSNT_02994___ 2046 TGTCAAAGGG-ATTAACTTAAAAGAGGATGACTTTGTTGTCTCCGGTGAG 2094
.|| |||||| ||.||..|||||||.|.|||....||.||.||.||..|.
RBAM_017910__ 2046 CGT-AAAGGGCATAAATGTAAAAGACGGTGATACCGTCGTATCAGGACAA 2094
BSNT_02994___ 2095 ATCCTTCAGCAATCTGATTCAATTGT-CTTGTTCACACAGCGGGGAGCGG 2143
|||||.||..|..|.|||||..|||| |||| ||||||||||||||||..
RBAM_017910__ 2095 ATCCTGCATGAGACAGATTCGCTTGTCCTTG-TCACACAGCGGGGAGCAA 2143
BSNT_02994___ 2144 TAAAACGCATGAGTCTTTCTGAGTTCGAGAAGACATCCCGCGCAAAACGC 2193
|.||.||.||||..||.|||||.|||||.||.||||||.|.||.||.|||
RBAM_017910__ 2144 TCAAGCGGATGAACCTATCTGAATTCGAAAAAACATCCAGGGCGAAGCGC 2193
BSNT_02994___ 2194 GGTGTCGTAATGCTAAGGGAACTGAAAAAGAATCCTCACCGAGTTGTAGC 2243
||||||.|.|||||..|.||.||.||||||||.||.||.||.|..||.|.
RBAM_017910__ 2194 GGTGTCATCATGCTGCGTGAGCTTAAAAAGAACCCGCATCGCGCAGTCGG 2243
BSNT_02994___ 2244 ACTGTTCGCTTGCGGTCTTGAACAGCGACTAATG------GCAGAAACAG 2287
..|.|||||.|||| |||.|.| |||| ||| ||.|||||||
RBAM_017910__ 2244 CGTATTCGCGTGCG--CTTTAGC--CGAC--ATGATCGCTGCGGAAACAG 2287
BSNT_02994___ 2288 AAAAAGGCGACAGAAAAGAACT-GCAGGCAAAAGAG---TTGCGGACAAA 2333
||||||||||.||||..|||.| ||.|..| || ||||||.|.||
RBAM_017910__ 2288 AAAAAGGCGAGAGAATCGAAATCGCCGTGA----AGTCCTTGCGGGCGAA 2333
BSNT_02994___ 2334 CGACAGATACAGCAATGGCTCTTTCTTTTTTGATGAAGAGGAATCAGGCA 2383
.|||.||||||||||.|||||.||||||...||||||||.||..||||..
RBAM_017910__ 2334 TGACCGATACAGCAACGGCTCCTTCTTTACCGATGAAGATGAGACAGGGC 2383
BSNT_02994___ 2384 AGGTTACAGCTGTTTGGCG----CCTTCATACAGAACAATAA 2421
.|||.||||..||.||||| ||..|.| |.||....|||
RBAM_017910__ 2384 CGGTAACAGACGTATGGCGTATCCCCGCGT-CTGATGTTTAA 2424
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