Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02988 and RBAM_017870

See Amino acid alignment / Visit BSNT_02988 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:50
# Commandline: needle
#    -asequence dna-align/BSNT_02988___yneR.1.9828.seq
#    -bsequence dna-align/RBAM_017870___yneR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02988___yneR-RBAM_017870___yneR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02988___yneR-RBAM_017870___yneR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02988___yneR
# 2: RBAM_017870___yneR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 303
# Identity:     222/303 (73.3%)
# Similarity:   222/303 (73.3%)
# Gaps:          30/303 ( 9.9%)
# Score: 777.0
# 
#
#=======================================

BSNT_02988___      1 ATGAATATGACAATTAACG-AAGACGCATTGAACTGGTATAAAGAAGAAC     49
                     |||||.|||| ||.||||| |||.|||..||.|.|||||.||||||||.|
RBAM_017870__      1 ATGAACATGA-AAGTAACGAAAGGCGCGCTGGATTGGTACAAAGAAGAGC     49

BSNT_02988___     50 TCGATTTGGAAAGCGGAGACCAGGTTCGCTTTTTCGTCCGCTATGGAGGC     99
                     |||||.||||||..||.|||||.||.||.||.||.|||||.||.||.||.
RBAM_017870__     50 TCGATCTGGAAACAGGCGACCATGTCCGTTTCTTTGTCCGTTACGGGGGA     99

BSNT_02988___    100 TGCAGCAACGTTCAAAAGGGTTTTTCTCTCGG---TGTAGCGAAAGATGC    146
                     ||||||||||||||.||.||.|||||||||||   |.||   |||||   
RBAM_017870__    100 TGCAGCAACGTTCAGAAAGGCTTTTCTCTCGGCATTTTA---AAAGA---    143

BSNT_02988___    147 CCCACAAGAGGC---TGGA----GTCA-CTGCA--GAAGCTGACGGCATT    186
                      ||      |||   ||.|    |.|| |.|||  ||||.|||.||||||
RBAM_017870__    144 -CC------GGCCGATGAACATCGGCACCAGCACGGAAGTTGAAGGCATT    186

BSNT_02988___    187 ACCTTCTTTATTGAAGAAAGTGATTTATGGTACTTCGATAACCACGACCT    236
                     |||||.||||||||||||||.||.|||||||||||.|||||.||||| .|
RBAM_017870__    187 ACCTTTTTTATTGAAGAAAGCGACTTATGGTACTTTGATAATCACGA-TT    235

BSNT_02988___    237 TCTC-GTCAGCTATTCAGAAGACGCTGATGAACCGGTTTTTGAATACCAA    285
                     |.|| ||||..||||||||..|.||.||.||.|||||.|||||.|||...
RBAM_017870__    236 TGTCAGTCACATATTCAGATCAGGCAGAAGAGCCGGTATTTGATTACGTG    285

BSNT_02988___    286 TAA    288
                     |||
RBAM_017870__    286 TAA    288


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