Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02979 and RBAM_017810

See Amino acid alignment / Visit BSNT_02979 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:50
# Commandline: needle
#    -asequence dna-align/BSNT_02979___yneN.1.9828.seq
#    -bsequence dna-align/RBAM_017810___yneN.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02979___yneN-RBAM_017810___yneN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02979___yneN-RBAM_017810___yneN.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02979___yneN
# 2: RBAM_017810___yneN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 538
# Identity:     372/538 (69.1%)
# Similarity:   372/538 (69.1%)
# Gaps:          53/538 ( 9.9%)
# Score: 1182.0
# 
#
#=======================================

BSNT_02979___      1 ATGCTGAAAAAATGGCTCGCAGGGATCCTGCTTATCATGCTTGCTGGT-T     49
                     |||||....||||||||.|..||.||..|.|||||| .|.|||.|.|| |
RBAM_017810__      1 ATGCTTGCGAAATGGCTGGGCGGAATGTTACTTATC-GGGTTGTTAGTGT     49

BSNT_02979___     50 ATACGGGATGGA--ATTTATATCAAACATACAGCAAA-----AAAGAA--     90
                     ||.||||.||||  |||||| ||   ..||||..|||     ||||||  
RBAM_017810__     50 ATGCGGGCTGGAACATTTAT-TC---TGTACAAAAAAGTCCGAAAGAAGG     95

BSNT_02979___     91 GTCGGAATTCAAGAGGGGAAACAAGCACCTGATTTTTC-TTTGAAAACGC    139
                     |.|||     ||||.||||...||||.|||||.|||.| .||| |.||..
RBAM_017810__     96 GACGG-----AAGAAGGGATGAAAGCCCCTGACTTTACACTTG-ATACAT    139

BSNT_02979___    140 TGTCAGGAGAGAAAAG-----CTCTTTACAGGATGCAAAAGGCAAAAAAG    184
                     ||||||||   |||||     |.||||  ..|||...|||||.|||||||
RBAM_017810__    140 TGTCAGGA---AAAAGTATCTCCCTTT--CTGATTATAAAGGAAAAAAAG    184

BSNT_02979___    185 TGCTGCTCAATTTTTGGGCAACTTGGTGTAAGCCGTGCCGTCAGGAAATG    234
                     ||||.||||||||.|||||.||.|||||.|||||||||||...|||||||
RBAM_017810__    185 TGCTCCTCAATTTCTGGGCGACGTGGTGCAAGCCGTGCCGAATGGAAATG    234

BSNT_02979___    235 CCTGCGATGGAAAAGCTGCAAAAAGAGTACGCCGACAAACTTGCGGTTGT    284
                     ||.|..|||.|..|||||||.|||||.||..|.||.|   |||||||.|.
RBAM_017810__    235 CCCGATATGCAGGAGCTGCAGAAAGAATATCCTGATA---TTGCGGTAGC    281

BSNT_02979___    285 TGCGGTAAATTTCACTTCAGCTGAGAAAAGTGAGAAACAGGTCCGTG---    331
                     .||.||.|||||.||.||..||||.||||   |.|.||||| |.|||   
RBAM_017810__    282 AGCCGTTAATTTTACATCCTCTGAAAAAA---ATATACAGG-CTGTGAAA    327

BSNT_02979___    332 -CGTTTGCTGATACGTATGATTTAACGTTCCCCATTCTGATTGATAAAAA    380
                      |.|||||||||...|||.|..|.||.||.||.|||||||||||.||||.
RBAM_017810__    328 TCATTTGCTGATCATTATCAGCTGACCTTTCCTATTCTGATTGACAAAAG    377

BSNT_02979___    381 AGGGATCAATGCTGACTATAACGTGATGTCATATCCAACGACATATATCT    430
                     .||.||.||.|..||.|..||||||.|.||.|||||.||.|||||.||.|
RBAM_017810__    378 CGGAATTAACGGAGATTTCAACGTGCTTTCTTATCCGACAACATACATAT    427

BSNT_02979___    431 TAGATGAAAAAGGTGTTATCCA---AGACATA--CATGTTGGCACCATGA    475
                     ||||.||||||||    |.|||   || ||||  |..||.|||||.||||
RBAM_017810__    428 TAGACGAAAAAGG----AACCATTCAG-CATATTCGCGTAGGCACGATGA    472

BSNT_02979___    476 CAAAAAAAGAAATGGAACAAAAACTGGATCTTGATTAG    513
                     ||||||||||||||.||.|||||||||||||..|.|||
RBAM_017810__    473 CAAAAAAAGAAATGAAAGAAAAACTGGATCTCAAATAG    510


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